RNA id: TCONS_00049906


Basic Information

Item Value
RNA id TCONS_00049906
length 5386
RNA type mRNA
GC content 0.41
exon number 19
gene id XLOC_025281
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22375596 ~ 22422169 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGTGTATGAACAATTGTTTTGTTTGGTACAAGattattgttttatcattttttatcgttttaatataatttttttcttttttttgtatttttgttttatttttatttctatttttatatatataaatataattgtcaCAATCATTTTGATCCTTGATTACTTTTCTCACTCTCTCTATGTCAAAAAGTAcaataatattctaaaatgtatgatatttgttaaaaaaaattgttgtagaAAAATGTACTGTGGACACgtgtacatgttattatagaaacatggtgcctgtcaatcaatttggtgggcggggaaaaccgcactcctactttacattgcagtgggcctcaaaatcactgggatttggttCCTATtgtaacgtcaggaaatttaaaaatagagacttgttgggtttatatcactccaacatGACAGTGGACATACTATATATACAgatagttctgtccaaacagcttacacaagttgattttcatcattgtataaaatgaataaaataaaataaaatgaatttagtagagaaaaaaaatgcatacatgTTTATGATCATAATGAAAGCTTCACCAATCAGTCGACACAGAGTGCATCATGTGACTTTAAACAATGTGTGCACTGAATAAACTTGAGTAATTAGCACATTAATTTGTGATGGACTACTGCTCCATCTCTTTATCAAAACTTGATTTCCTATTCTTTTTATATTCCAGGAAAGCACAACACATTCCAGCTTGCCAAAATGGAACGCCATTGAAAGTACAGAGTCCAATGGCAACAGTAAATCTTCAAGTGCCCCACCCAGAAAACAtacttttctccttttttttctgctggggtGTGGCGTGCTGTCCCGATCACACATATCTGAGGGAGGGCCTTTCCTGAGCCTTGATTCCAGTTTGATTCCCTCAAGGGTTGAATGGGAGAGACGGGCAAGATGACGTCTGTACACACTCTTGGCCTGGTATTGGTGGAGTTTGAATATGAATATGAGGGCCGTGATGGCCACATGGTGTGCATTAAACCCAACGAGCGCTACATCCTCCTGGCCAAAACAAATGATCACTGGTGGCATGTGTGCAAAGATGAACGAGCCAAGCCATTTTATATCCCTGCGAAATATGTAAAAGAGCTTCCGCCCAACATTCCTTCACCTCTAGACTACAGAGAGCCTCCAGGTCCTGATGTGAAGCCTGCGGTGCCTGACCTCACCGAGACCCGCAAAGCAGATGAGGTGACAATTAGACTTCGCTCCAAAGGGAACTACCACAAGACAGAAAACCGCATGTCAACGTTTGGGGTTCCTTTGGACTTACACGAGCCCCCTTCTTACAAACACGGCGGACCTTCAGATTCTCTCATCTCCCTGAGCTCGGTTTCTGCTTCAGATTCATCGAAGCAGAAGAAGAGGATGAGTCATGCACCTAATCTGCTCTTCGGGTCTCATAATAATCTACCAACCGAATTGGTGCCTGATAAATTTAGAGTGCCGAGTTTCAGCCCAGCCGATCCTCTACATAGACCTATCCCTGCCAAACCAGTGGAGATCCCCATCATCAAGAACTTAAATGAGACCAAGCCCCACCGGAAATCTCCTGAATTGGAGTCGCCGATAGAGCCTGAAAGTGAAAGTTCCAGTTCAGAACCAATGCCATCACCAGATTCTGAGAATATTTATGAATCCATATCTGACCTAAATATAGATCTCTCATTACTTACTGACAAGGAACCAGCTGGATTGCCAGATGCTCAGACCACCACATCATCCTTACCTCCATCAATAAAGACGGACAATGATCCCACCACAGCACTGTATGCAAACGTTGCAGACATAAAGAAGAACATTCCTCGCTCCTCAAACTCCTCCGTCTCCACCTGCTCCTCTCCTGGCATCACCCTCAGTCCTGCCCCAGACTCCATCTCTCCGCCCAGCTCGGCCGAATGGCGAGTTCACACTGACCACGACAGCGGTAAGGAGTTCTACTACCACCCGGCCACAGGACAAAGCAGCTGGTCTGACCCCCGCAGCCCTCAGCCGGGAGCAGGAATGGAGTCTGTGATGGCCCCCGTGCCTGCGTCCAGCCCACCCTCGGCACGCTCCGACTGGGAGCAGCTTTTGGATGAGgccactgggagacattattattataatcatgcCTCCAATGAAACTTCTTGGACTGCCCCTGAGCCATCAGCACCTGCTTCCTCCAAGCAGGGGCCACACAGTCAGGACAAGGACAAAGAGCGGCCGCCTCCTTTGCCAGAAGAGGACTACCCAAAAAATCAACATGAGGAATCTCATATTTCATTTCAGCTCCCTAAGGATTTCCAATTGCCTCAAATCAAGCGCGCCGTCATCCCAAGGGCTGTTATGGACACAAATAAAGATGTCCCCACGGGCTGGACTCAGTCTGTAGGGACTGATGGGAAATCTGTGTTCACAAGTGAACTCACACATGAACAGTGGATCCAGTCTAAAGATGAAAAAGGAAAGTTGTATTACTACTCAAAAGACGGGTCTAAATGCCAGTGGACCCTTCCAGAGGCTTCAGTTCCACCCGGTCAGCCGATGAATGGAAATGGAGTAGAACAAGATGGTCCACCTGTTTTGAACAATTGGAGATACACTCAGTTCAACATATCTCAGGAGGACCTGAAATTTTCCCCCTCGCACAGGCGGATCGCCTCTGACAATGCCAGTGATGCATCCAGCTCAGGGAATTCACCAGAATCACAGCACTATGACAAAAAGTTCAGACGGCGGAGGAACCTGTCAAGTTACAGCACCGATTCACATTCTCATCATTCATCACTGGAGAAGGCAGGGATTCTCAACAAGACCAAAGTGGCTGAGAATGGAAAAAGGCTGAGGAAAAACTGGGCTCAGTCGTGGACTGTTCTTCATGACGGTGTACTCACTTTCCACAAAGACCCCAAATTTGCACCTGCTGGGATGTCTAGCAAGACCAATCAGATTGTCCCTGAGTACACTGTAGAACTAAAAGGGGCGACTTTATCATGGGCGTCTAAAGAAAAGTCAAGCAAGAAGAACGTTCTCGAGCTCAAGACACGTCATGGCTCTGAGTATCTGATACAGTACGACACAGACAGCATCATTCAAGACTGGCAAAAGATCATTTTGGACACCATCAAACTGCTGCATGAACACGGCCATAACTCAGAGGATGAAGCAGAAGACGTCCCGGAAAAATCTCCATTGCCTGCAGATAAAGAAAAGAAGCCTGAAGCTGCGAGACTGAGTTCTACAAGTAGCATAGACACAGACCAGGGCCGTGTTCGCACCAAACTGCGCAAGTTTCTCCAGAGGCGGCCCACCCTGCAGTCCGTCAAAGAGAAAGGCTACATTAAAGAGAATGTGTTTGGCTGTCACTTAGACACCCTCTGTCATCGAGAAAACACAACTGTGCCCAAGTTTGTGGAAAAATGCATCCGATCAGTTGAGAAAAGAGGTCTCAAAATAGATGGAATCTACAGAGTGAGCGGAAACCTTGCTGTCATTCAGAAGCTGCGATATAAAGCTGACCATGAGGAGGATCTGGATCTGGAGGATGGCCAGTGGGAGGAGATCCATGTGATCACTGGAGCTTTGAAGCTTTTCCTACGTGAACTTCCTGAGCCCCTTTTCCCTTTCAGCTTTTTTGATAAGTTCATCGCTGCTATTCAAATTAGTGACTACAGCCAGAAAGTTTCATACATTCGAGATCTGGTGAGAAATCTGCCTCTGCCCAACCACGACACCATGGAGGTTCTCTTCAGACATCTCCGCAAGGTGATTGAGCATGGTGAGATGAACCGCATGTCTGTCCAAAGCACGGCAATTGTGTTCGGCCCAACACTGCTGAGGCCACAGGAGGAGTCCAACATCACCATGCACATGGTCTTCCAGAACCAGATTGTGGAGCTCGTACTCAACGAGTTCAATGAGCTTTTCCAGACCAAATGAAATCTCCCTATGGAAGGAAAGGAAATGCATTGATCAATGCCTTCATTTCCATTATCCCTGAAATAAATGTCTGTCTTCTGATTGGATATTGACTGCCCAGATCAATTAATAAGTGCCTTCTGAAACATCAAGAGCTTCTGCATCTCGAAACTCTTGTTCCTGAATGCCgtctgtgttattttttggtactGCCAAAAAACTCAAGGGATCATCAGCTGATACGATCAAATGGATTTTAATAAGAACATCTAGTTTATCAAGGTGTTATGCTTGGGATGAGACAGCAGTAGAGTTCTCAGTTAGACATTACTATACTTAAAATGGATATTAGGCAAGCAGAGCACGTGTGTATATGTTACtgaataatatactgtatattattgctaCTCACCCAAAACTGTTCCTGTGGAACAACAAAAGAGCTTTTAGTTAgctaaacaaacatttaattgtatttttttctgtgagATTTCTGCGCAGTTTTTGAACTAACAAATTACCACAAGGTATGGACATTTGCCTcatgtataatttttttctctggaaaaaaaataaaaagaaacttcAGCTTTAAAGTGCTCAATAATCACTAATGTGGAAAAAGCACTGGCTGTTGAACTTATCTGTGGATGAAAAAGGGGGGAAGGAGTTTTATTAATAATACCCTGTATGACTAACATTCTTCCACTGTCTGTAATTCTTCAAGCTCGAATAttgtctaaaaaaacaaaaacaaatgctgacAGTACAATGTACTGAAGTGAAAATGGATATAATGAACATTATGCAGCAGagtaaaatgtgcatttaaattgTGTTAAATACAAACTGCAGATGTAGACTAAAGctgtacatattttaaataggttgtttatataaaaatgtgGGTAAGAAATAATTAGCAGTTTTATCACAGAGACATGTTCTGTAAATAAAAAGGATAGCATATTTAATTATATGCAAATATGTGCATAGTTTTTACACTGGTAATTACTGAATATACAGTAAAGGAAATGGATCaacatgtttttaacattatgaaagttcatatattttgaaaatatgaTAACATGTATGTACGTCAGTTTTAAACAGTGAACAGATATCATCACTTTACTAGATTAACGCAATGtgagaaattataaataaataatggtgccttctttttcacttttttagCTTGTCTGTTTTGTTCTTCCCTGTTTTGCCAGTTTATtaatgatatataaaaatactaatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatatatgtatgtatgtatgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatataagtgagtgtatgtgt

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120406-11 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP27 (Rho GTPase activating protein 27).

Ensembl:

ensembl_id ENSDART00000188243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 213114 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 224774 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 329025 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 337684 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049885 lncRNA upstream 424171 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00049918 lncRNA downstream 214501 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 346065 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 424167 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 424214 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 432504 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049900 mRNA upstream 4119 22334012 ~ 22371477 (+) False XLOC_025279
TCONS_00049902 mRNA upstream 13871 22345497 ~ 22361725 (+) False XLOC_025279
TCONS_00049903 mRNA upstream 27660 22345582 ~ 22347936 (+) False XLOC_025279
TCONS_00049901 mRNA upstream 34490 22335030 ~ 22341106 (+) True XLOC_025280
TCONS_00049899 mRNA upstream 42683 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049909 mRNA downstream 4545 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049910 mRNA downstream 9900 22432069 ~ 22546951 (+) False XLOC_025282
TCONS_00049911 mRNA downstream 20276 22442445 ~ 22551356 (+) False XLOC_025282
TCONS_00049912 mRNA downstream 21144 22443313 ~ 22547301 (+) True XLOC_025282
TCONS_00049915 mRNA downstream 156200 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049893 other upstream 314508 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1344723 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1344725 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1695558 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 3025779 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 146818 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 813499 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1251208 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1271987 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1298482 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

//