RNA id: TCONS_00049907


Basic Information

Item Value
RNA id TCONS_00049907
length 4475
RNA type mRNA
GC content 0.44
exon number 19
gene id XLOC_025281
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22375596 ~ 22422169 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAACTTTGAGCTGTACTGTAGGTGGAATGTCAAAGTGCTTGTGCGAAAGACAGAAAGCTGTATAAGGCATTAAGTGGCGTGAACTTTCAAGAAAGGAAAAGAGATTTAAAGCAAACAAAAGAGACGGATCCTACAAATGTAACTTGGTTGAGAAGAGAAAGAATCAAAGGTGTTGAGAAGATGGTGCGGCAATCTCGcctatgcagGAGGGCCTTTCCTGAGCCTTGATTCCAGTTTGATTCCCTCAAGGGTTGAATGGGAGAGACGGGCAAGATGACGTCTGTACACACTCTTGGCCTGGTATTGGTGGAGTTTGAATATGAATATGAGGGCCGTGATGGCCACATGGTGTGCATTAAACCCAACGAGCGCTACATCCTCCTGGCCAAAACAAATGATCACTGGTGGCATGTGTGCAAAGATGAACGAGCCAAGCCATTTTATATCCCTGCGAAATATGTAAAAGAGCTTCCGCCCAACATTCCTTCACCTCTAGACTACAGAGAGCCTCCAGGTCCTGATGTGAAGCCTGCGGTGCCTGACCTCACCGAGACCCGCAAAGCAGATGAGGTGACAATTAGACTTCGCTCCAAAGGGAACTACCACAAGACAGAAAACCGCATGTCAACGTTTGGGGTTCCTTTGGACTTACACGAGCCCCCTTCTTACAAACACGGCGGACCTTCAGATTCTCTCATCTCCCTGAGCTCGGTTTCTGCTTCAGATTCATCGAAGCAGAAGAAGAGGATGAGTCATGCACCTAATCTGCTCTTCGGGTCTCATAATAATCTACCAACCGAATTGGTGCCTGATAAATTTAGAGTGCCGAGTTTCAGCCCAGCCGATCCTCTACATAGACCTATCCCTGCCAAACCAGTGGAGATCCCCATCATCAAGAACTTAAATGAGACCAAGCCCCACCGGAAATCTCCTGAATTGGAGTCGCCGATAGAGCCTGAAAGTGAAAGTTCCAGTTCAGAACCAATGCCATCACCAGATTCTGAGAATATTTATGAATCCATATCTGACCTAAATATAGATCTCTCATTACTTACTGACAAGGAACCAGCTGGATTGCCAGATGCTCAGACCACCACATCATCCTTACCTCCATCAATAAAGACGGACAATGATCCCACCACAGCACTGTATGCAAACGTTGCAGACATAAAGAAGAACATTCCTCGCTCCTCAAACTCCTCCGTCTCCACCTGCTCCTCTCCTGGCATCACCCTCAGTCCTGCCCCAGACTCCATCTCTCCGCCCAGCTCGGCCGAATGGCGAGTTCACACTGACCACGACAGCGGTAAGGAGTTCTACTACCACCCGGCCACAGGACAAAGCAGCTGGTCTGACCCCCGCAGCCCTCAGCCGGGAGCAGGAATGGAGTCTGTGATGGCCCCCGTGCCTGCGTCCAGCCCACCCTCGGCACGCTCCGACTGGGAGCAGCTTTTGGATGAGgccactgggagacattattattataatcatgcCTCCAATGAAACTTCTTGGACTGCCCCTGAGCCATCAGCACCTGCTTCCTCCAAGCAGGGGCCACACAGTCAGGACAAGGACAAAGAGCGGCCGCCTCCTTTGCCAGAAGAGGACTACCCAAAAAATCAACATGAGGAATCTCATATTTCATTTCAGCTCCCTAAGGATTTCCAATTGCCTCAAATCAAGCGCGCCGTCATCCCAAGGGCTGTTATGGACACAAATAAAGATGTCCCCACGGGCTGGACTCAGTCTGTAGGGACTGATGGGAAATCTGTGTTCACAAGTGAACTCACACATGAACAGTGGATCCAGTCTAAAGATGAAAAAGGAAAGTTGTATTACTACTCAAAAGACGGGTCTAAATGCCAGTGGACCCTTCCAGAGGCTTCAGTTCCACCCGGTCAGCCGATGAATGGAAATGGAGTAGAACAAGATGGTCCACCTGTTTTGAACAATTGGAGATACACTCAGTTCAACATATCTCAGGAGGACCTGAAATTTTCCCCCTCGCACAGGCGGATCGCCTCTGACAATGCCAGTGATGCATCCAGCTCAGGGAATTCACCAGAATCACAGCACTATGACAAAAAGTTCAGACGGCGGAGGAACCTGTCAAGTTACAGCACCGATTCACATTCTCATCATTCATCACTGGAGAAGGCAGGGATTCTCAACAAGACCAAAGTGGCTGAGAATGGAAAAAGGCTGAGGAAAAACTGGGCTCAGTCGTGGACTGTTCTTCATGACGGTGTACTCACTTTCCACAAAGACCCCAAATTTGCACCTGCTGGGATGTCTAGCAAGACCAATCAGATTGTCCCTGAGTACACTGTAGAACTAAAAGGGGCGACTTTATCATGGGCGTCTAAAGAAAAGTCAAGCAAGAAGAACGTTCTCGAGCTCAAGACACGTCATGGCTCTGAGTATCTGATACAGTACGACACAGACAGCATCATTCAAGACTGGCAAAAGATCATTTTGGACACCATCAAACTGCTGCATGAACACGGCCATAACTCAGAGGATGAAGCAGAAGACGTCCCGGAAAAATCTCCATTGCCTGCAGATAAAGAAAAGAAGCCTGAAGCTGCGAGACTGAGTTCTACAAGTAGCATAGACACAGACCAGGGCCGTGTTCGCACCAAACTGCGCAAGTTTCTCCAGAGGCGGCCCACCCTGCAGTCCGTCAAAGAGAAAGGCTACATTAAAGAGAATGTGTTTGGCTGTCACTTAGACACCCTCTGTCATCGAGAAAACACAACTGTGCCCAAGTTTGTGGAAAAATGCATCCGATCAGTTGAGAAAAGAGGTCTCAAAATAGATGGAATCTACAGAGTGAGCGGAAACCTTGCTGTCATTCAGAAGCTGCGATATAAAGCTGACCATGAGGAGGATCTGGATCTGGAGGATGGCCAGTGGGAGGAGATCCATGTGATCACTGGAGCTTTGAAGCTTTTCCTACGTGAACTTCCTGAGCCCCTTTTCCCTTTCAGCTTTTTTGATAAGTTCATCGCTGCTATTCAAATTAGTGACTACAGCCAGAAAGTTTCATACATTCGAGATCTGGTGAGAAATCTGCCTCTGCCCAACCACGACACCATGGAGGTTCTCTTCAGACATCTCCGCAAGGTGATTGAGCATGGTGAGATGAACCGCATGTCTGTCCAAAGCACGGCAATTGTGTTCGGCCCAACACTGCTGAGGCCACAGGAGGAGTCCAACATCACCATGCACATGGTCTTCCAGAACCAGATTGTGGAGCTCGTACTCAACGAGTTCAATGAGCTTTTCCAGACCAAATGAAATCTCCCTATGGAAGGAAAGGAAATGCATTGATCAATGCCTTCATTTCCATTATCCCTGAAATAAATGTCTGTCTTCTGATTGGATATTGACTGCCCAGATCAATTAATAAGTGCCTTCTGAAACATCAAGAGCTTCTGCATCTCGAAACTCTTGTTCCTGAATGCCgtctgtgttattttttggtactGCCAAAAAACTCAAGGGATCATCAGCTGATACGATCAAATGGATTTTAATAAGAACATCTAGTTTATCAAGGTGTTATGCTTGGGATGAGACAGCAGTAGAGTTCTCAGTTAGACATTACTATACTTAAAATGGATATTAGGCAAGCAGAGCACGTGTGTATATGTTACtgaataatatactgtatattattgctaCTCACCCAAAACTGTTCCTGTGGAACAACAAAAGAGCTTTTAGTTAgctaaacaaacatttaattgtatttttttctgtgagATTTCTGCGCAGTTTTTGAACTAACAAATTACCACAAGGTATGGACATTTGCCTcatgtataatttttttctctggaaaaaaaataaaaagaaacttcAGCTTTAAAGTGCTCAATAATCACTAATGTGGAAAAAGCACTGGCTGTTGAACTTATCTGTGGATGAAAAAGGGGGGAAGGAGTTTTATTAATAATACCCTGTATGACTAACATTCTTCCACTGTCTGTAATTCTTCAAGCTCGAATAttgtctaaaaaaacaaaaacaaatgctgacAGTACAATGTACTGAAGTGAAAATGGATATAATGAACATTATGCAGCAGagtaaaatgtgcatttaaattgTGTTAAATACAAACTGCAGATGTAGACTAAAGctgtacatattttaaataggttgtttatataaaaatgtgGGTAAGAAATAATTAGCAGTTTTATCACAGAGACATGTTCTGTAAATAAAAAGGATAGCATATTTAATTATATGCAAATATGTGCATAGTTTTTACACTGGTAATTACTGAATATACAGTAAAGGAAATGGATCaacatgtttttaacattatgaaagttcatatattttgaaaatatgaTAACATGTATGTACGTCAGTTTTAAACAGTGAACAGATATCATCACTTTACTAGATTAACGCAATGtgagaaattataaataaataatggtgccttctttttcactt

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120406-11 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP27 (Rho GTPase activating protein 27).

Ensembl:

ensembl_id ENSDART00000155597

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 214830 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 226490 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 330741 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 339400 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049885 lncRNA upstream 425887 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00049918 lncRNA downstream 214735 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 346299 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 424401 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 424448 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 432738 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049900 mRNA upstream 5835 22334012 ~ 22371477 (+) False XLOC_025279
TCONS_00049902 mRNA upstream 15587 22345497 ~ 22361725 (+) False XLOC_025279
TCONS_00049903 mRNA upstream 29376 22345582 ~ 22347936 (+) False XLOC_025279
TCONS_00049901 mRNA upstream 36206 22335030 ~ 22341106 (+) True XLOC_025280
TCONS_00049899 mRNA upstream 44399 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049909 mRNA downstream 4779 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049910 mRNA downstream 10134 22432069 ~ 22546951 (+) False XLOC_025282
TCONS_00049911 mRNA downstream 20510 22442445 ~ 22551356 (+) False XLOC_025282
TCONS_00049912 mRNA downstream 21378 22443313 ~ 22547301 (+) True XLOC_025282
TCONS_00049915 mRNA downstream 156434 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049893 other upstream 316224 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1346439 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1346441 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1697274 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 3027495 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 147052 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 813733 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1251442 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1272221 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1298716 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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