RNA id: TCONS_00049910


Basic Information

Item Value
RNA id TCONS_00049910
length 4473
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_025282
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22426714 ~ 22551356 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGCTACACCATCCTCTCAGTCAAACAGGAGAAAATCATAGACGAGATTGATGAAGAGGCGAAGACCTTCATCATGAAGGGTCCTCGGACAGGGGCGAACTCTTAAACCCTCCATTTCTCCATGTGGAAGGACTCGCAGCATTGCAATTTTGGCAAGACAGGAAACATTTGATGCTCTGTGGATTTATTACCATCTGTTAGCATCTATTAGCACTAAGCACATTTTCCCCACATTATAAATATGCCTCTGAACTAGTTGCAATGATTTTAGaatacagttatttatttaagtcATTGTCATTTCTTATGTTTGTTGATAAgatcattataataaaaaaaatatataatatagaatTCGACAGGCTTCGTGTTTTGGCTGTTTGAgtttgtttcaggtgtgttttcGATTGTCTTCCACTAGATGGCGGCATGTGAAGTCTCAATGAGAGCAGACCCGAAGGCTGACAAAAGTGGAACGGCAGCGTTTTAGTGAAGAGGTGGAGATGCTAAAGTGCCTGCAGCATCCAAACATCGTCCGATTCTACGACTCCTGGAAGTCCACCATGAAAGGGCACAAGTGCATTATCCTGGTGACGGAGCTCATGACGTCAGGGACGCTAAAGACGTATCTGAAAAGGTTCAAAGAAATGAAGCTGAAGCTTCTCCAGCGATGGAGTAATCAGATCTTGAAAGGCCTTCACTTCCTGCACACCCGAACACCTCCCATAATTCACAGAGACCTTAAATGTGACAACATCTTCATCACTGGCCCAACTGGATCTGTTAAGATTGGAGATTTGGGCCTAGCCACCCTCAAGAGTGCCTCTTTTGCCAAAAGTGTCATCGGAACTCCCGAGTTCATGGCTCCAGAGATGTATGAGGAAAAATATGACGAGGCTGTGGACGTTTATGCCTTTGGCATGTGCATCCTAGAGATGACCACATCAGAATACCCATACTCTGAGTGCCAAAACGCTGCACAGATCTACCGCAAAGTCACCAGTgGCATGAAGCCAGACAGCTTCTACAAAGTTAAAGTTCCCGAGCTGAAAGAGATCATTGAGGGATGCATCCGGATGAACAAAGACGAAAGGTACACCATCCAGGACCTGTTAGAGCACACCTTCTTCCAGGAGAATAATGGTGTCCATGTTGAACTGGCTGAGGAAGATGACATGGTGAAGTCTGGCCTTAAATTATGGCTTCGAATGGACGACACCAAGAAGCTTCATGGCAAATATAAGGACAACAATGCCATTGAGTTCCTGTTTGAACTCTACAAGGACGTCCCGGAGGAGGTGGCTCAGGAGATGGTTGTTCTTGGCTTCGTCTGTGAGGCCGATTATAAACTTGTGGCCAAAGCCATTCGAGACCGTGTTACCACCATAAAGCGACAACGAGAGAAGCTTCGCCGACATGTTGGAGAAGAGCTGATAAGACGTCAAGAGGAGGTGATTGAGGAGGAACCAGAACCTAGTTTTGAAACTGAATCTATGGTTTCCAGCGCACCTGCTCTTAGACCTCCTGTAGAGACGCCTGTATCTGCCCCTACTCAAGCTCCGCCCACAGTCACAGTGTCAGGCCCTACCCCCCTGCCTGCAAATGAATCTCTGGATTCTGGCTTCAATGCTAGCTTTGCAACTGAACCTGAGGAACCAGCAGATGCAGACCAGCGGCAGCATTTCAACATACGCCATGCCAGCTACTCATCAGCAACATCTGACTGTGAGACGGATGGTTATCTCAGCTCCTCTGGTCTTCAGGAGCTTTCAGAAGCTCGAGCTCCATTAGCAAACCAACCCTCCACAGCTCCATCACTGCCCAGTGCAGCACCTCGTGTGGAAACTCCACCTGTTGAGGCTCCTCCTACTGAAGCCCCTTCTACTCCAGCCATCCCAGCACTCCGCTTTCCCTCGAGTATTGCTGTGTTCCAAAACACAGAGAAGGCGCAGTCAGGAAGTGCCAGTGGTTTTTCCTCTCCTGTTGACAGCTACGCTTCTGATGTCACCTCAGGTTTGAGTGACGGAAACGAGGGCCTTTCGGAGAGGGCCGGAAAAGGTCAAAGCAAACGCACAGGAACCAAGCTTCTCAGGAAGAGGGCTCGCTCACGGCTACGCATCACTGGGCTATCAGATAAAGTGGACCGGGTTGTGGAGTGTCAATTGCAGACACATAACAGCAAAATGGTGACATTTAAATTCGATCTGGACGGAGACAACCCTGAAGACATTGCCACAGTCATGGTACTTAATGAGTTTATTCTACCTGGGGAGAAGGAGGGATTCATCCACCGCATGCGGGACATCATTCGTCGGGCAGAGGCCCTGATGAGGAGAGAGCCTTTAGAGCCGCTGGGGTCGACAGACACTGCTCATCTCAATTACCTGAGCGGAGTCGGCTCTCTGTCCGCCtcacagCCCAATCTCTACACACAGGGCCTCGCTCGCACACACTCCTCTTCCTCACTGCCAGATTATGCTGCTGGTCCATTGACTCGGGGTTCCTCACCTACTCTAAGTGCCGACTTTTATGTTGATCCTGATGCCGTTCCACCCGTCCGTCCTCTGCGTTCACAATCCTTCCACACTACAGGTTCAACCCACAACTTCCAGTCCCCTGCACCCACTTACTCGCAGTTCTCCCACCCTGATGTTCTGCCACATCACCTGCCGAATCAGATGTCTGCCATGCCCCCTCAGTTCAACAATCCAGCATATTTCCATAACTCCCACttttccccttacccctaccaaGTGGACCATGCTTCCCTGAAGAGCCCCCTCAACCCAAGTCCACTCACCCGTGTCCCCAGCAACCCAAACTTCTCTTCCTCATCTTCTTCCTCTTCTATGGTTTCACCAGTTCAGCAGTCCGTTGAGATGCCACCTCAAGCAGAAACCAGCACTCTACCGCCTGGAGTTGCTCATTCACAAGGTTCGCAAGCTCCAGGCATGTGGCCACCACCTTCCCAGCAGCCTTTTATTTCACTTGCCAATGTTCTATCTCTGGCTATGAACTTTGCACAGTCCTTTATCCCCCCTGGATCCATGCCTCAAGGTTTCCACCCTCAAATGACCCCTCAGCCTGGGTATGGCCCTATGTACCCTCAGCATGCGAGCATGAGCGCTGTCGATGCTCAGTTCCACCAGGGGGCACTGAACAGTCAGTACATGGATATGTACCAATATGCTGATCCACATACACAGATTCTGGCACAAGTTCCTGAACCTCAAGAAGGGAGACAAACGATGTCTCCACAAGCAGTCTCTCTTGGAGAAACAAGAACAGGCATGACTCCCGAGGTTAAACAATCCATTCCCACAAACCCAAGCCCTTCTCCTGTGAGCAAAAGTGTCCCTCTGGCAGAGAACCAGTCCACCACCTTGGGGCAGCTCAGAGAGCGGGCGGACAGTTCAGCGTCGAGCTCCCGCACCACATCCAGCACAAGCTCACCAGCATCTTCCACATCCGCTAGTCCGCAAAACACTGTTTCTCCGCCCGTCCTAAGGTCCTCCCCGACTCTGTCCATGTCTCTGGCGGTGTCTGAAACTACTACTAATATTGCAGCCAAATGCAGACTCTCACCTATATCTGAAGAGAAAAAGCCTTTTGTGACTGTGGGACGGTTCCATGTTAGTCCAAGCAAGGAAATCCCAATTCAAGCTCCCAACCCGACTCCTAGCCTGACGCAAACTCCTATCCCCACAACTCCATCCACATCAATGCTAACCCAAACATCTCATAAAACACTTCCCCAAACCACGCCCCCCAcaaacaacagccaatcagacagCAGCACAGATGTCCAGGTGGATTCTGAAAGCACTCCCAGCTCTCTAAATGAGTCCTCACCACTCACCAAGCAGCCTAACGTGACTTTACCCAAAGCAGACACCGCCCCCGTATGGACTGGAGAAACCAAATCCCTAGACAGAAGAGTTGTAGATCCTGATGAGAGATGTGAAATAggggaggaggtggaggaggggACAGAAAGGAGGCGGAGGAGGATAAGTGTGAGTCTGCTGGACAGTTCGGCCGGGAGTCCTCAGTTCAGTCTAAATCAGCCGTGGATGAGTTACACACGCAGCACATCGTACGCCAGCAGCGACGACACTGAGAGCGAAGACGAGGAAATGTATCAGGAGCTCCAGGAACTCAGAGAGAGACATGTTGAAGAGGTTCAGGCCCTCCAGGCCTCACAAAAGCAGGAGATCGAGGAGCTGTACAAGCGCATTGGTAAAGTGCCCCCTCCTGGAATCGTCTCCCCAGCGGCCATGTTGTCTAGCCGGCAGCGTCGCCTGTCTAAGAGCAGCGGATACCCCACCTCTCGCAGAAACAGCTTGCAGAGATTGGAGATACTGCCCCCTACAGGTATCATGCGCAAGAACTCAATGAGTGGCAGCAGCAGCGGATCTCAGGAAAGGAGCAGTAAAGGAGTAACCTTTGCAACCGATTATGCCAGAATTTGA

Function

GO:

id name namespace
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-119 Predicted to enable chloride channel inhibitor activity; potassium channel inhibitor activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including protein phosphorylation; regulation of metal ion transport; and renal sodium ion absorption. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in hypertension and pseudohypoaldosteronism. Orthologous to human WNK4 (WNK lysine deficient protein kinase 4).

Ensembl:

ensembl_id ENSDART00000123054

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 269587 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 281247 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 385498 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 394157 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049885 lncRNA upstream 480644 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00049918 lncRNA downstream 89719 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 221283 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 299385 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 299432 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 307722 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049906 mRNA upstream 9900 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049905 mRNA upstream 9900 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049908 mRNA upstream 9900 22381955 ~ 22422169 (+) True XLOC_025281
TCONS_00049907 mRNA upstream 10134 22377312 ~ 22421935 (+) False XLOC_025281
TCONS_00049904 mRNA upstream 51282 22345675 ~ 22380787 (+) True XLOC_025279
TCONS_00049915 mRNA downstream 31418 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049914 mRNA downstream 31418 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049916 mRNA downstream 31419 22578370 ~ 22815059 (+) False XLOC_025284
TCONS_00049917 mRNA downstream 44444 22591395 ~ 22813473 (+) False XLOC_025284
TCONS_00049921 mRNA downstream 358390 22905341 ~ 22976103 (+) False XLOC_025287
TCONS_00049893 other upstream 370981 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1401196 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1401198 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1752031 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 3082252 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 22036 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 688717 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1126426 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1147205 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1173700 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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