RNA id: TCONS_00049912


Basic Information

Item Value
RNA id TCONS_00049912
length 4835
RNA type mRNA
GC content 0.51
exon number 21
gene id XLOC_025282
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22426714 ~ 22551356 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTTCTAATGTTAACTGCACCGATACCTGCTCCAATGTCTCAGGCTGAGGTTGACATGGCTGGTCTTGGCTTCCCGAAGTTGCCTGCAGGGTTTGACGCGGACTCGTTCTTCCCAGCGCGCCTGCCACCGAGACGGAGGAGACACTCGGCAAACTCCAGGAGGAATGCCTACAGGTTCAACAAACTCCACACCATGGAGCCCCAGGAAAGCGTCGCTCCTCTTACAAAAACACTTTCTTGGTCGGCCGACAACATTTTATCCGAAAACGCCAACGAGGAGAAAAAGACGGACTCTTCCCCTCCGATGTCACCTGTCTCCAGTTCACCCCCTGAGACGCAGAACTCGGACCCGCGACCGCTGGACACCTGGGCCGCCGAGGAGCCCAGCGCGCAGGAGGCTGATGCCAGTTCGGACTCGGACGATGAAAGCACCCAGAAGAAAGTGGTTTTGTCGAGAGCCCCTTTTGAGAGCAAACGCGAGCAGGAGGAAAAGGATGAGGTCGAGACTAAAGCTGTGGCGACTTCACCTGACGGAAGGTTTCTGAAATTCAACATTGAAATTGGAAGAGGGTCTTTTAAGACCGTCTACAAAGGTTTGGATACGGAGACCACCGTGGAGGTTGCATGGTGTGAACTTCAGACCCGAAGGCTGACAAAAGTGGAACGGCAGCGTTTTAGTGAAGAGGTGGAGATGCTAAAGTGCCTGCAGCATCCAAACATCGTCCGATTCTACGACTCCTGGAAGTCCACCATGAAAGGGCACAAGTATCTGAAAAGGTTCAAAGAAATGAAGCTGAAGCTTCTCCAGCGATGGAGTAATCAGATCTTGAAAGGCCTTCACTTCCTGCACACCCGAACACCTCCCATAATTCACAGAGACCTTAAATGTGACAACATCTTCATCACTGGCCCAACTGGATCTGTTAAGATTGGAGATTTGGGCCTAGCCACCCTCAAGAGTGCCTCTTTTGCCAAAAGTGTCATCGGAACTCCCGAGTTCATGGCTCCAGAGATGTATGAGGAAAAATATGACGAGGCTGTGGACGTTTATGCCTTTGGCATGTGCATCCTAGAGATGACCACATCAGAATACCCATACTCTGAGTGCCAAAACGCTGCACAGATCTACCGCAAAGTCACCAGTgGCATGAAGCCAGACAGCTTCTACAAAGTTAAAGTTCCCGAGCTGAAAGAGATCATTGAGGGATGCATCCGGATGAACAAAGACGAAAGGTACACCATCCAGGACCTGTTAGAGCACACCTTCTTCCAGGAGAATAATGGTGTCCATGTTGAACTGGCTGAGGAAGATGACATGGTGAAGTCTGGCCTTAAATTATGGCTTCGAATGGACGACACCAAGAAGCTTCATGGCAAATATAAGGACAACAATGCCATTGAGTTCCTGTTTGAACTCTACAAGGACGTCCCGGAGGAGGTGGCTCAGGAGATGGTTGTTCTTGGCTTCGTCTGTGAGGCCGATTATAAACTTGTGGCCAAAGCCATTCGAGACCGTGTTACCACCATAAAGCGACAACGAGAGAAGCTTCGCCGACATGTTGGAGAAGAGCTGATAAGACTCACAGTGTCAGGCCCTACCCCCCTGCCTGCAAATGAATCTCTGGATTCTGGCTTCAATGCTAGCTTTGCAACTGAACCTGAGGAACCAGCAGATGCAGACCAGCGGCAGCATTTCAACATACGCCATGCCAGCTACTCATCAGCAACATCTGACTGTGAGACGGATGGTTATCTCAGCTCCTCTGGTCTTCAGGAGCTTTCAGAAGCTCGAGCTCCATTAGCAAACCAACCCTCCACAGCTCCATCACTGCCCAGTGCAGCACCTCGTGTGGAAACTCCACCTGTTGAGGCTCCTCCTACTGAAGCCCCTTCTACTCCAGCCATCCCAGCACTCCGCTTTCCCTCGAGTATTGCTGTGTTCCAAAACACAGAGAAGGCGCAGTCAGGAAGTGCCAGTGGTTTTTCCTCTCCTGTTGACAGCTACGCTTCTGATGTCACCTCAGGTTTGAGTGACGGAAACGAGGGCCTTTCGGAGAGGGCCGGAAAAGGTCAAAGCAAACGCACAGGAACCAAGCTTCTCAGGAAGAGGGCTCGCTCACGGCTACGCATCACTGGGCTATCAGATAAAGTGGACCGGGTTGTGGAGTGTCAATTGCAGACACATAACAGCAAAATGGTGACATTTAAATTCGATCTGGACGGAGACAACCCTGAAGACATTGCCACAGTCATGGTACTTAATGAGTTTATTCTACCTGGGGAGAAGGAGGGATTCATCCACCGCATGCGGGACATCATTCGTCGGGCAGAGGCCCTGATGAGGAGAGAGCCTTTAGAGCCGCTGGGGTCGACAGACACTGCTCATCTCAATTACCTGAGCGGAGTCGGCTCTCTGTCCGCCtcacagCCCAATCTCTACACACAGGGCCTCGCTCGCACACACTCCTCTTCCTCACTGCCAGATTATGCTGCTGGTCCATTGACTCGGGGTTCCTCACCTACTCTAAGTGCCGACTTTTATGTTGATCCTGATGCCGTTCCACCCGTCCGTCCTCTGCGTTCACAATCCTTCCACACTACAGGTTCAACCCACAACTTCCAGTCCCCTGCACCCACTTACTCGCAGTTCTCCCACCCTGATGTTCTGCCACATCACCTGCCGAATCAGATGTCTGCCATGCCCCCTCAGTTCAACAATCCAGCATATTTCCATAACTCCCACttttccccttacccctaccaaGTGGACCATGCTTCCCTGAAGAGCCCCCTCAACCCAAGTCCACTCACCCGTGTCCCCAGCAACCCAAACTTCTCTTCCTCATCTTCTTCCTCTTCTATGGTTTCACCAGTTCAGCAGTCCGTTGAGATGCCACCTCAAGCAGAAACCAGCACTCTACCGCCTGGAGTTGCTCATTCACAAGGTTCGCAAGCTCCAGGCATGTGGCCACCACCTTCCCAGCAGCCTTTTATTTCACTTGCCAATGTTCTATCTCTGGCTATGAACTTTGCACAGTCCTTTATCCCCCCTGGATCCATGCCTCAAGGTTTCCACCCTCAAATGACCCCTCAGCCTGGGTATGGCCCTATGTACCCTCAGCATGCGAGCATGAGCGCTGTCGATGCTCAGTTCCACCAGGGGGCACTGAACAGTCAGTACATGGATATGTACCAATATGCTGATCCACATACACAGATTCTGGCACAAGTTCCTGAACCTCAAGAAGGGAGACAAACGATGTCTCCACAAGCAGTCTCTCTTGGAGAAACAAGAACAGGCATGACTCCCGAGGTTAAACAATCCATTCCCACAAACCCAAGCCCTTCTCCTGTGAGCAAAAGTGTCCCTCTGGCAGAGAACCAGTCCACCACCTTGGGGCAGCTCAGAGAGCGGGCGGACAGTTCAGCGTCGAGCTCCCGCACCACATCCAGCACAAGCTCACCAGCATCTTCCACATCCGCTAGTCCGCAAAACACTGTTTCTCCGCCCGTCCTAAGGTCCTCCCCGACTCTGTCCATGTCTCTGGCGGTGTCTGAAACTACTACTAATATTGCAGCCAAATGCAGACTCTCACCTATATCTGAAGAGAAAAAGCCTTTTGTGACTGTGGGACGGTTCCATGTTAGTCCAAGCAAGGAAATCCCAATTCAAGCTCCCAACCCGACTCCTAGCCTGACGCAAACTCCTATCCCCACAACTCCATCCACATCAATGCTAACCCAAACATCTCATAAAACACTTCCCCAAACCACGCCCCCCAcaaacaacagccaatcagacagCAGCACAGATGTCCAGGTGGATTCTGAAAGCACTCCCAGCTCTCTAAATGAGTCCTCACCACTCACCAAGCAGCCTAACGTGACTTTACCCAAAGCAGACACCGCCCCCGTATGGACTGGAGAAACCAAATCCCTAGACAGAAGAGTTGTAGATCCTGATGAGAGATGTGAAATAggggaggaggtggaggaggggACAGAAAGGAGGCGGAGGAGGATAAGTGTGAGTCTGCTGGACAGTTCGGCCGGGAGTCCTCAGTTCAGTCTAAATCAGCCGTGGATGAGTTACACACGCAGCACATCGTACGCCAGCAGCGACGACACTGAGAGCGAAGACGAGGAAATGTATCAGGAGCTCCAGGAACTCAGAGAGAGACATGTTGAAGAGGTTCAGGCCCTCCAGGCCTCACAAAAGCAGGAGATCGAGGAGCTGTACAAGCGCATTGGTAAAGTGCCCCCTCCTGGAATCGTCTCCCCAGCGGCCATGTTGTCTAGCCGGCAGCGTCGCCTGTCTAAGAGCAGCGGATACCCCACCTCTCGCAGAAACAGCTTGCAGAGATTGGAGATACTGCCCCCTACAGGTATCATGCGCAAGAACTCAATGAGTGGCAGCAGCAGCGGATCTCAGGAAAGGAGCAGTAAAGGAGTAACCTTTGCAACCGATTATGCCAGAATTTGATTTCTCTCGCTAAGGAGCTCTTTGTCCCCCGTCCTGCTCTGTGTCTGGATTGAAGTGACATCATTGCTTTCTCATGCCACTGCTGATGTTTTTGGTATGAAGAAAGGAGTCTGTGTGTTTTTCAACAGGCTCTGACGGGAATATTTCTTTAACCATTATACCTCTGCTCAGTAATTTAAGGATGATTTGCTTACATTGTGAGCTTTCTGAAGAGTCGGGCACTGAAGAGTATGTGCAgactttatatatacagttgacgtcataattattaaccccctttgatttttgttttctttttttttatatttcccaaattatgtttaacagagcaaggaaactttcacagtatg

Function

GO:

id name namespace
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-119 Predicted to enable chloride channel inhibitor activity; potassium channel inhibitor activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including protein phosphorylation; regulation of metal ion transport; and renal sodium ion absorption. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in hypertension and pseudohypoaldosteronism. Orthologous to human WNK4 (WNK lysine deficient protein kinase 4).

Ensembl:

ensembl_id ENSDART00000156450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 280831 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 292491 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 396742 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 405401 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049885 lncRNA upstream 491888 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00049918 lncRNA downstream 89369 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 220933 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 299035 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 299082 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 307372 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049909 mRNA upstream 10885 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049906 mRNA upstream 21144 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049915 mRNA downstream 31068 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049914 mRNA downstream 31068 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049916 mRNA downstream 31069 22578370 ~ 22815059 (+) False XLOC_025284
TCONS_00049917 mRNA downstream 44094 22591395 ~ 22813473 (+) False XLOC_025284
TCONS_00049921 mRNA downstream 358040 22905341 ~ 22976103 (+) False XLOC_025287
TCONS_00049893 other upstream 382225 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1412440 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1412442 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1763275 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 3093496 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 21686 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 688367 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1126076 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1146855 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1173350 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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