RNA id: TCONS_00005983


Basic Information

Item Value
RNA id TCONS_00005983
length 412
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id XLOC_002538
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4573554 ~ 4583020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACACATGACTAGAATGAACTTGCTAACAAACACAAGGAAGAAATGACGACTTTGTCATTATTTATTGTCGCCTTTCTCCTTCTAGGATTCTCTTGCTCTTCACAGAGTGAGAGTTGTGTCGCAGGTAACGTCAGTTTGTCGGTGTCTGTCAGCAGAAACTCGACTCTACTGGTTGACTGGAACAGCGGGAGCAAACAGACGACCCAATGTGCACTGCTCGTATCAACCGAAGGGAGACAAGAAATTCAGATACACCTTTTGCCAAGGTCTGGATCTCTCGTATTGGAAAACATGACAGACAATTTTAAACACTCCTTCTTATGCACGTGTTTTGAACAGTCTCTGGGACTCTTGTGCTCCAAGAACATAAGCTTTGTTATgggAAATGGTTGAGCAGTGGTGTGTTTGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005981 lncRNA downstream 474371 4095871 ~ 4099183 (-) True XLOC_002534
TCONS_00005744 lncRNA downstream 527237 4032478 ~ 4046317 (-) True XLOC_002532
TCONS_00005980 lncRNA downstream 533049 4038226 ~ 4040505 (-) True XLOC_002533
TCONS_00005979 lncRNA downstream 616705 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00004721 lncRNA downstream 1146196 3422181 ~ 3427358 (-) True XLOC_002528
TCONS_00005984 lncRNA upstream 229295 4812304 ~ 4818311 (-) False XLOC_002539
TCONS_00005985 lncRNA upstream 229295 4812304 ~ 4818606 (-) True XLOC_002539
TCONS_00005746 lncRNA upstream 336314 4919323 ~ 4922051 (-) True XLOC_002540
TCONS_00004732 lncRNA upstream 420983 5003992 ~ 5010275 (-) False XLOC_002543
TCONS_00005986 lncRNA upstream 435549 5018558 ~ 5024285 (-) False XLOC_002543
TCONS_00004726 mRNA downstream 198364 4367430 ~ 4375190 (-) True XLOC_002536
TCONS_00004725 mRNA downstream 257539 4279521 ~ 4316015 (-) False XLOC_002535
TCONS_00004724 mRNA downstream 257539 4279521 ~ 4316015 (-) True XLOC_002535
TCONS_00004719 mRNA downstream 1145924 3419832 ~ 3427630 (-) False XLOC_002528
TCONS_00004727 mRNA upstream 357758 4940767 ~ 4961923 (-) False XLOC_002541
TCONS_00004728 mRNA upstream 370343 4953352 ~ 4961929 (-) True XLOC_002541
TCONS_00004729 mRNA upstream 386625 4969634 ~ 4980150 (-) True XLOC_002542
TCONS_00004730 mRNA upstream 417614 5000623 ~ 5016997 (-) False XLOC_002543
TCONS_00004731 mRNA upstream 419138 5002147 ~ 5020378 (-) False XLOC_002543
TCONS_00004723 other downstream 804788 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 1066900 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004703 other downstream 1697819 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 1697819 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 4233527 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004736 other upstream 435549 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 437177 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 437268 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004756 other upstream 1367454 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 1834696 6417705 ~ 6431288 (-) True XLOC_002557

Expression Profile

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