RNA id: TCONS_00049918


Basic Information

Item Value
RNA id TCONS_00049918
length 807
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_025284
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22578369 ~ 22817455 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAGGTTTAAATCATAAGGAGATGGGACTTGGGCTTCTGCCCACAGGAGAACGATTCCAACTCTGCCCCTATTGCTGTGACCGGTTTGCCGTGAGGCCCCGTACCCCCTTCTAATGATTTCTCTTTAGCCCAGTCCAGAGCAGTGCAGTCATGTTCAGGAACAGTCTGAAGATGCTGCTTGGCGGCAAATCCAACCGCAAGAATCGAAACAGTGGCAGTGACTCCGTGGAGGGCGAGTGTGTGTTCGAGGGGGATTACGCTGTCCCTCCTCTCCCGGTGACCGAGGGCATGCAGCACATTCGGATCATGGAGGGCGTGACACGCTCTCTCCCCTCCTCTCCTCTGCTGTCCCATCAGGCCCTCAACATGCGTCTGCAACCCATCAAGAGACTGCCAGGTAACACCCCATGTGTGTTCAGTTTTTGTGTTGCTGTTGTGTTTACGTGGCTTGTGTACTTGTGTGTGTCAGCGAGAAGCACCTCCTGTTTCCCTTCTCAAACACTCCAACTGAATGCCAGATCTCCCGCAGAGAGCACAAATGCCTTCACCTTGCATACCAGCAAGAGTGTGAatgagcttgtgtttgtgtgcgtgtttgagagGTAACGATTGTGTTGGAATGTGTTATTTTTAGGGTAGTTGGTTTACAAGTTTGTGCAATTAAGGGAATTTAGCAAAAGATGTCTGAAGGATTGTGTTTTTAAAGAAGAGAGATATTAAAATAtctcattttttatttgaaattttttatcaggtaaaaaaaaattaaatcaaggcTAACTCGACgaataattatttttagtttt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-180 Is expressed in hindbrain; neural rod; olfactory placode; pectoral fin; and retina. Orthologous to human TANC2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2).

Ensembl:

ensembl_id ENSDART00000151172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 474188 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 485848 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 590099 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 598758 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00052647 lncRNA upstream 639112 21929930 ~ 21997558 (+) False XLOC_025274
TCONS_00049919 lncRNA downstream 41814 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 119916 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 119963 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 128253 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052650 lncRNA downstream 370022 23096442 ~ 23213329 (+) False XLOC_025293
TCONS_00049911 mRNA upstream 85314 22442445 ~ 22551356 (+) False XLOC_025282
TCONS_00049912 mRNA upstream 89369 22443313 ~ 22547301 (+) True XLOC_025282
TCONS_00049910 mRNA upstream 89719 22432069 ~ 22546951 (+) False XLOC_025282
TCONS_00049909 mRNA upstream 204242 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049906 mRNA upstream 214501 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049921 mRNA downstream 178921 22905341 ~ 22976103 (+) False XLOC_025287
TCONS_00049922 mRNA downstream 208763 22935183 ~ 22976456 (+) True XLOC_025287
TCONS_00049923 mRNA downstream 257678 22984098 ~ 22994433 (+) True XLOC_025288
TCONS_00049924 mRNA downstream 273429 22999849 ~ 23020551 (+) True XLOC_025289
TCONS_00049925 mRNA downstream 303064 23029484 ~ 23047180 (+) False XLOC_025290
TCONS_00049913 other upstream 67564 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 575582 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1605797 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1605799 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1956632 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 509248 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 946957 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 967736 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 994231 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 1368740 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

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