RNA id: TCONS_00049919


Basic Information

Item Value
RNA id TCONS_00049919
length 520
lncRNA type retained_intron
GC content 0.47
exon number 2
gene id XLOC_025284
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22578369 ~ 22817455 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGGGCAGCCTGAAACTCTGGCAGGCACAAAAGTCAATGGGCACGGACTCCTTCCTCTATAGGGTGGATGAAAACATGGCCGCCTCCACATACAGCCTCAATAAAATCCCTGAGAGGAGCCTGGAGCACTCTGTGTCTCACTCCGCTCACTCCATCCCGCTCTACCTCATGCCCCGGCCCAACTCTGTGGCAGCCACCAGTTCGGCTCACCTGGAGGACCTTGCGTATCTGGATGAGCAGAGACAGGCTCCACTGCGCACTTCTTTGAGAATGCCACGTCAGAACTCCGGTTCGAGCCGAACTGGACAAGCAGACATGAGAGGTCTGTACAATCCTTTTCCATTTTGTGCATGTAATACTTTCACTCACTTTCACTTGTTTTTAGTATTCTACACTCCTCTTCCACACATTTTTACTGTTCTGTACAtgtgacattatatatatatttttttttttgttcaacaactgcatagttttttttaatattcagcaGCAACGTGCAAATTGAATTGTCATTC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-180 Is expressed in hindbrain; neural rod; olfactory placode; pectoral fin; and retina. Orthologous to human TANC2 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2).

Ensembl:

ensembl_id ENSDART00000140169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049918 lncRNA upstream 41814 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00052648 lncRNA upstream 605752 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 617412 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 721663 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 730322 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00052336 lncRNA downstream 69866 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 69913 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 78203 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052650 lncRNA downstream 319972 23096442 ~ 23213329 (+) False XLOC_025293
TCONS_00052651 lncRNA downstream 320252 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00049911 mRNA upstream 216878 22442445 ~ 22551356 (+) False XLOC_025282
TCONS_00049912 mRNA upstream 220933 22443313 ~ 22547301 (+) True XLOC_025282
TCONS_00049910 mRNA upstream 221283 22432069 ~ 22546951 (+) False XLOC_025282
TCONS_00049909 mRNA upstream 335806 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049908 mRNA upstream 346065 22381955 ~ 22422169 (+) True XLOC_025281
TCONS_00049921 mRNA downstream 128871 22905341 ~ 22976103 (+) False XLOC_025287
TCONS_00049922 mRNA downstream 158713 22935183 ~ 22976456 (+) True XLOC_025287
TCONS_00049923 mRNA downstream 207628 22984098 ~ 22994433 (+) True XLOC_025288
TCONS_00049924 mRNA downstream 223379 22999849 ~ 23020551 (+) True XLOC_025289
TCONS_00049925 mRNA downstream 253014 23029484 ~ 23047180 (+) False XLOC_025290
TCONS_00049913 other upstream 199128 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 707146 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1737361 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1737363 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 2088196 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 459198 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 896907 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 917686 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 944181 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 1318690 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

//