RNA id: TCONS_00052649


Basic Information

Item Value
RNA id TCONS_00052649
length 1814
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_025285
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22846336 ~ 22848196 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgtcctgtggctgccgtcgcatcatccaagtggatgctgcacactggtggtggtgtggagaaaccACCCATCCCCCCAAATGCTGAGAGATGAAGCAGATAAGTGGTGTAGCAGAGGGAGAGAAATCTCACACACCGTTCCAAAGGTAAGTTTCAGATCTTCAGTATTACACCAACAAAGCTTTAGTCACTTCccttaagcaggtgtgtttgcatCCACAGGAGAAGAAAGACATCCACGGAGGAGAAGAAAAGGAAGAGGGAGAGATGATGAGGAAAACCATCTGACTTCGATTTCAGCAGGTGATTGAATGAAGGAGATGAGTTTATATAGTGCATGAGGGATTGCAGGTGCAGGTGCGGGTGATCAGTAATCAGGTGATTGCTGTAGGAATGAGCCGAGGGTGTGACAATTTAATATACAATGAAACataatattactatattatgtaattataatatttaaaaataaaatatcaaccaCCCCTATCATGGAACTGTCCAGATGTctagtttataaatatatttattgtttttagttgtaaattcattttaaggaAACAAATCCTTGTAGTGCTTGCATTAAGATAAAACATAGAAAAGCAGATTTAGTGACATACAAACACAgctaaaaaaatataacaaataaaagtaGAAATAGTGCATTTCAGGACTCAGGGCCCCATGGCTGgcattgcttagggcccccaaatcactaaaccCACCTCTGATAGCAATACTAATAATGTTACATCATggacacgtgctgctgatgatgtgacaataaaagtgatttaataaaACTGATTTGATTTGACTGCtcatgaaagggatagttcacttaaaaatgacaattttattgtcatctgttgaacacaaaaaaagttattttagaaaaatgctgcttgctgggacccattgactcccatagtagcCTACATTTTattcctactatggaggtcaatgggtgCCAACAATagcatccttcaaaatatcttcttttgcagaagaaagaaacccacaAAGGTTTAAAATCACACAATGGAAAATAAACAGTGAggtaattttcacttttgggtgaactgtgcctttaatgtcATTACCAGGCTCTGGATCAACAAATCCCACAGGAAGATTTCAAAGCGTCTGCCAAGCTCAAACAACTCCCATTCAATTTTCTCCCATTTAACTCCACAATTTTTGTAGCAAATctgctttttttaacatttggaaTAAACAAATACCTACAACTTTTTAAGCATGCAGCTTTTACATTCCTGCAGCGTGTTGTACGTGTTAAAGCTAAACAGAGAGGGCTGGTTTCGGTGACATTTCCTCAATCTTTGTTCTGCGTTCATCCTACTCTTATCCTGTTTTCTCTCTGTTGTACCAGGAAGAGAACAAAAATTCATGTGTTTTGTCCCTGCGGCTGTGAGGTggtggagtgtttttttttttttttttttttttttgctgtggatgGTTTATTTTTAGCTGCTTTTCTTATCTGTCAACATGTGCACATCGATCGCTCCGCACCACCTTCACATGAATGAGCCTTTGACGTAAAAGAGCAAACTATCTGCCTCTCACTGGGAAGAAAGGCACAGAGGGAACCAGATCTGTTTCCCCCTTTTGCTTGGAATTCCTGCTCTGATGCACTGCTAGTCTGAAGCAGGGCTAGGTGATGTGACAGAAATCTCATATCACTGTATAAGTCATCTAACAATATTAATCTATCATGTAACAATatagtacactgtaaacaaaaaaagctgggtttcacacaatcgatttgttttgcgacaacataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049919 lncRNA upstream 69913 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00049918 lncRNA upstream 119963 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00052648 lncRNA upstream 683901 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 695561 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 799812 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049920 lncRNA downstream 6477 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052650 lncRNA downstream 248246 23096442 ~ 23213329 (+) False XLOC_025293
TCONS_00052651 lncRNA downstream 248526 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00049935 lncRNA downstream 248532 23096728 ~ 23213329 (+) False XLOC_025293
TCONS_00049936 lncRNA downstream 248548 23096744 ~ 23180443 (+) False XLOC_025293
TCONS_00049915 mRNA upstream 28928 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049914 mRNA upstream 28928 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049916 mRNA upstream 31324 22578370 ~ 22815059 (+) False XLOC_025284
TCONS_00049917 mRNA upstream 32910 22591395 ~ 22813473 (+) False XLOC_025284
TCONS_00049911 mRNA upstream 295027 22442445 ~ 22551356 (+) False XLOC_025282
TCONS_00049921 mRNA downstream 57145 22905341 ~ 22976103 (+) False XLOC_025287
TCONS_00049922 mRNA downstream 86987 22935183 ~ 22976456 (+) True XLOC_025287
TCONS_00049923 mRNA downstream 135902 22984098 ~ 22994433 (+) True XLOC_025288
TCONS_00049924 mRNA downstream 151653 22999849 ~ 23020551 (+) True XLOC_025289
TCONS_00049925 mRNA downstream 181288 23029484 ~ 23047180 (+) False XLOC_025290
TCONS_00049913 other upstream 277277 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 785295 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1815510 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1815512 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 2166345 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 387472 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 825181 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 845960 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 872455 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 1246964 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

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