RNA id: TCONS_00049924


Basic Information

Item Value
RNA id TCONS_00049924
length 1492
RNA type mRNA
GC content 0.51
exon number 2
gene id XLOC_025289
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22999849 ~ 23020551 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCTTTGAGGAAAAAGTGGTTCTGTTAGTGTCTAGTGGATAAAAGGAACAAAGCACTCAGTGTTTCACGCACTATATCTATTACTACACTTTTAATGTTTATTGGTAAAAACCGCAAGCTTTTGTGTGTTTTCGCATTGACTGCGAGCATTTCGGGGGCGGAGGGGCTGGGGGAAGAAAATGAGTCGCATATGGTTTTAAGGCGATTAAAAAAGACATTTCAGCTGCACCAGATTGCGAATATCCAGCTCATCTGATAAAGTCAGCATTTTCGTACCACAACATAAACATTTAATGGAAACTAACTGCAGTGTCCCGTAGAAAGCTGAGGATCCGCTGTGCAGCAGTCTGTCGCCACATCATGCTGCTCTCCATCGCGGTGTTTTCACTCTTCCTGTGTCCGTCGAGGAGCTCTAGGCTGTGCTCTCACCTGTGCCAGTGCTATGAACACTCAGACTTGGTGGACTGCCATGCCAGGGGCTTCGAGGACGTGCCTCACGGTCTTCCTCACGGGACCTGGCTCCTGGATTTGGGAGGAAACAGACTCACGGAGATCCGCAGTCGAGCTTTTGCTGGTCTGTGGTCTTTGCGTATTCTAGTGCTTTCTGACAGCAACATCCAGGCTCTTCAATCCCAGGCTTTCTTCTCTCTATCCTTTCTGGAGAAGCTGGACATGAGTCATAACAACCTCACCCAGATCCCACCGAACTTCTCCGAGAGCCTATCTTCCTTGCGTGAGCTGCGGCTGGACCACAATGCACTGCAGCTGTTGAAACCTCCAGGGCTGGAACATCTGGAGAACCTTGCGAAGCTGGACCTCAGCCACAATCACATCCAGTCTCTGGAACCCGGCGCTTTCCGAGGCCTGTCCCGTCTGCGGCACCTTTACCTGCAAGGGAACCACCTAGATGTCATTCGGGACAGATCCCTCACTATGTTGCCTGCTCTAGAAGTCCTGCAGCTAGGGAACAACAACATCTCTCAGATTGAGGTAAACGCACTCGCACCCTTACACAGTCTCTCGCTTTTGGGTTTAGAAGGGAATCAACTGGAGCACCTGAATTTTAAGACGTTTTTGAGTTTGCGCACGGCCACTACGCACCTGCTGTTGTCTGGAAACCCGTGGAGCTGCGACTGTGACCTGCACCGTGTTTTCAGCAAGCTGCTTAGCGTTCGGCACCTTCACGTTGACGACTACCATAACGTAACTTGTCGGGAGCCGTGGCAGCTGGCCGGAGCCTCTTTGGCCTGGGTGGACAGTCAGCTGTGCGTGGCCGAGACAGTCACTGTGCTGGTCATCACCGCTACCGTCATCGTGACCGTCTTTGGTGCTTTGATCATGGCAGAGAGAAAACGCAAGAAGAGAAAGTACTGGGAGCAGAACGATGGGGAATCACAATAGTCTGATAATGCATACACTAAAACATAAacctcaaactggattcctggagagccacagctctgcagagttttgctctaaccctaatcaaac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-468 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000127239

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049920 lncRNA upstream 119402 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052336 lncRNA upstream 151653 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA upstream 151653 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049919 lncRNA upstream 223379 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00049918 lncRNA upstream 273429 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00052650 lncRNA downstream 75891 23096442 ~ 23213329 (+) False XLOC_025293
TCONS_00052651 lncRNA downstream 76171 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00049935 lncRNA downstream 76177 23096728 ~ 23213329 (+) False XLOC_025293
TCONS_00049936 lncRNA downstream 76193 23096744 ~ 23180443 (+) False XLOC_025293
TCONS_00052652 lncRNA downstream 76221 23096772 ~ 23213329 (+) False XLOC_025293
TCONS_00049923 mRNA upstream 5416 22984098 ~ 22994433 (+) True XLOC_025288
TCONS_00049922 mRNA upstream 23393 22935183 ~ 22976456 (+) True XLOC_025287
TCONS_00049921 mRNA upstream 23746 22905341 ~ 22976103 (+) False XLOC_025287
TCONS_00049914 mRNA upstream 182394 22578369 ~ 22817455 (+) False XLOC_025284
TCONS_00049925 mRNA downstream 8933 23029484 ~ 23047180 (+) False XLOC_025290
TCONS_00049926 mRNA downstream 9383 23029934 ~ 23043324 (+) False XLOC_025290
TCONS_00049927 mRNA downstream 24663 23045214 ~ 23059288 (+) False XLOC_025290
TCONS_00049928 mRNA downstream 24671 23045222 ~ 23050844 (+) False XLOC_025290
TCONS_00049929 mRNA downstream 26690 23047241 ~ 23060121 (+) False XLOC_025290
TCONS_00049913 other upstream 430743 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 938761 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1968976 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1968978 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 2319811 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 215117 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 652826 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 673605 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 700100 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 1074609 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

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