RNA id: TCONS_00049929


Basic Information

Item Value
RNA id TCONS_00049929
length 2881
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_025290
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23029484 ~ 23060121 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCCAGCTCTGAATGGGCTGGTCAGCTCTAAGTGAGCTgtacaaacctcctggagtttacattgatttatttaatgtcttgtacatggaCATGGAATCCaacctattgtgttttattaatgttctaTCACCATCCGATCCTTACTCCCACTTCAATAGTATCTAGCTGCAGATTTGCAGTCTCAGTCATGCAGTCTTAAGACACATGCACTCAATAGAACAGGTGACATCACTGTGAAATTGGGTTAGGAGCGGTGTTAGTTGTGCGCATATGGTCTGAGCTTGAATGTAATTccgtctgcagccagacccttctctcCTTTAATGTCACCTAACTTACTTGCAGCATAACTTCCTTGCACTTGGTGTTCTCTGTGCTGCAAAGATACCTGCTTGAAAGTTCACAAACCTTCAGTATGAGATCATCTTTCATAATGAACTGCAAACACCACCTGCTGCTGAAAGGTTTCCTGCTTCTGCTTGCTATTTGTTTCATCCAACTGGGGATCATGAGTGTCAAGAAAGACATAATAGCATCAAGTTCCGGCCCCCAACCTGGCAAAGTGTTCGCCAAGCCACACATTGAAACGTTTCTCTATACAAATCGCTTATCGTGTTCTCTTGAAGACGCTGTACTCACAAGACAGCATGTGCCACAAAATGAGCTGGAAGACATTGTGAAACGCAGAGCAGAGGAGTACAGACAACACCAAATCAGgATGGAAGCAGACATAGCCAGTCTGATTCTTGCACCTGCAAACTCTCCTCTCCAGTATCCAATCACAGGTTTCACAATATCTCCATTGAAAAAATCAATAGTACCAGGTCTTGCTCTTCATGCACAACAGAGGAAGGTGTACAAGGTGTCTTTGAGTGTGATGAGTGGTGTGCTCTCAGTGGAGGATGTTCAGGATGAACAGGTGGAAGGACAAGGCCAGAGTGAACTGATCATCTCGTCCAGCAACCTCACACAACTTAATGATCTGCTGTCCAGAGTGAGCTACACCAGCACCGTCTACCACATCAAAACATCAGACCTGGTTATTTTCTCTTTTGAAGACCATTTGGCAATGTTTCCCATCACAATTAAGAGACAGTCAGTTCCTGTCCTGTTTGATCCAGGGAATGATATCAACTCACAAGTAACCATAATAACCAAGACTTTTCTGAGGTATGAGGAGCTGAATATCCTTTTAAACAGTATCAGGAAGTTTTATCCAAAAATCAAGATCCTTATTGCTGACGACAGCATACAACCTAGAACTGTGTCTGGAGACAATATAGAGCACTACATCATGCCTCCTGCAAAGGGATGGTTTGCTGGAAGGAATCTTGCTCTATCACAAGTTGAAACCAAATATTTCTTGTGGGTGGATGATGACTTTGTATTTTTGAAAGATACCCGGATCGAGAGCTTTGTGGAGATTATGGAAGCTGTTCCAGAACTGGACATTcttGGTGGCAGCGTGATTGGTGATCCGCCTTATTTCATTCTTGAATATGACGAGGGAGATGAGGAAGAAGGCGGCTGCCTGAGCCGTATTTACAATCAGTTTCATCAGCCACTTCCAGGCTTTGATGACTGTGTTCTAGTAGATGGAGTTGTAAACTACTTTTTGGCTCGGACTGATGCAGTGAGAAGGGTTGGTTTCGACCCGTTCCTGAAAAGGGTGGCCCATTCTGagTTCTTCATGGATGGACTTGGCCAGTTGCTGGTTGCCTCCTGTGAAAGATTCACCATTGGCCACCAGGGGCATcgttttgagaaaaaatatagtcACTACAGGACCCAGACGGATgctgataaaagaaaaaaactctctCATCATTTCTTCAAGAACTATCTGAAATATGTCAAGTTCTAGAGGGTTTTTGTTTCAGCTTTAGCTTTGGAAGAAGTGCTTGATTAAAGCCATAACCAGGATTAGGACTGCTTTGCGTCTATGcgttcataattttttttctttaagttttctttagtttaatttatttggtGAATGTTgttacacacgcacacatatgaataataaaaataatatgtaaattgcCCTCAGCTTGTTCTTATAGAGTCTGATCCTGAAATATTATGGTGGTGTGTTTTGTGAAAATAAGAGGAATAGGACTGAACTCGCTAAAATGTGgcagcatattcattcattttcctttggtttagttccttatatatcagggctcaccacagcggaataaaccgccaactattttggcttatgttttatgtagctgatgcccttccggccactatgcaatactgggaaacacccatgtactcgcattctcacacacacacacttgttcactatggccaatttagtttacccaattcacttaaaccacatgtctttggactgtgggtgaaaccaggggacccggaggaaacccacacaaacatggggagaacatgcaaactccacaaagaaatgcctactggcccaactggggctcgaaccagcaacctttttgctgtgaggtgacagtgctaaccactgagccactgtgttacCTCAGCAGCATACTTTTGTACCAAACTAAAACGTGCCCTAAAAACTAAGTTGGTTTTATCATTGCATTACCAGATCAgaccaaatgaatgaaagtcCTTGTCTGCCTGCAAACTTAAAAAACTTGGGTTTTCCTCAACCTCAGGACAGTTTCTTTCCAGTCTTATAAGTGTCATGGCGAAATCTGGGGAGTAACTgagataattgaataaataatagatCATATTCTGCTAATGTATTTAGCTAAATGTTTTGTACTCGATGTAAGCTATTAAACTAATGGATTGAGAACAACAAAGTATATTAAATATCATCAACTTAATAACAATGGTCTTGTCCCTTTGTATCACTGTATTTTAttc

Function

GO:

id name namespace
GO:0000050 urea cycle biological_process
GO:0006526 arginine biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0103045 methione N-acyltransferase activity molecular_function
GO:0004042 acetyl-CoA molecular_function
GO:0034618 arginine binding molecular_function

KEGG:

id description
ko00220 Arginine biosynthesis

ZFIN:

id description
ZDB-GENE-130530-731 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process and UDP-N-acetylglucosamine metabolic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in membrane. Predicted to be integral component of Golgi membrane. Orthologous to human B4GALNT2 (beta-1,4-N-acetyl-galactosaminyltransferase 2).

Ensembl:

ensembl_id ENSDART00000103858

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049920 lncRNA upstream 166794 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052336 lncRNA upstream 199045 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA upstream 199045 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049919 lncRNA upstream 270771 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00049918 lncRNA upstream 320821 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00052650 lncRNA downstream 36321 23096442 ~ 23213329 (+) False XLOC_025293
TCONS_00052651 lncRNA downstream 36601 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00049935 lncRNA downstream 36607 23096728 ~ 23213329 (+) False XLOC_025293
TCONS_00049936 lncRNA downstream 36623 23096744 ~ 23180443 (+) False XLOC_025293
TCONS_00052652 lncRNA downstream 36651 23096772 ~ 23213329 (+) False XLOC_025293
TCONS_00049925 mRNA upstream 61 23029484 ~ 23047180 (+) False XLOC_025290
TCONS_00049926 mRNA upstream 3917 23029934 ~ 23043324 (+) False XLOC_025290
TCONS_00049924 mRNA upstream 26690 22999849 ~ 23020551 (+) True XLOC_025289
TCONS_00049923 mRNA upstream 52808 22984098 ~ 22994433 (+) True XLOC_025288
TCONS_00049922 mRNA upstream 70785 22935183 ~ 22976456 (+) True XLOC_025287
TCONS_00049932 mRNA downstream 3597 23063718 ~ 23085279 (+) False XLOC_025291
TCONS_00049931 mRNA downstream 3597 23063718 ~ 23085279 (+) True XLOC_025291
TCONS_00049933 mRNA downstream 32641 23092762 ~ 23096141 (+) False XLOC_025292
TCONS_00049934 mRNA downstream 32692 23092813 ~ 23096131 (+) True XLOC_025292
TCONS_00049937 mRNA downstream 160926 23221047 ~ 23237816 (+) False XLOC_025294
TCONS_00049913 other upstream 478135 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 986153 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2016368 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2016370 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 2367203 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 175547 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 613256 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 634035 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 660530 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 1035039 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

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