Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049930 |
| length | 663 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | XLOC_025290 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 23029484 ~ 23060121 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000050 | urea cycle | biological_process |
| GO:0006526 | arginine biosynthetic process | biological_process |
| GO:0005759 | mitochondrial matrix | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| GO:0103045 | methione N-acyltransferase activity | molecular_function |
| GO:0004042 | acetyl-CoA | molecular_function |
| GO:0034618 | arginine binding | molecular_function |
| id | description |
|---|---|
| ko00220 | Arginine biosynthesis |
| id | description |
|---|---|
| ZDB-GENE-130530-731 | Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process and UDP-N-acetylglucosamine metabolic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in membrane. Predicted to be integral component of Golgi membrane. Orthologous to human B4GALNT2 (beta-1,4-N-acetyl-galactosaminyltransferase 2). |
| ensembl_id | ENSDART00000155792 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049920 | lncRNA | upstream | 167530 | 22854673 ~ 22880447 (+) | True | XLOC_025286 |
| TCONS_00052336 | lncRNA | upstream | 199781 | 22846336 ~ 22848196 (+) | False | XLOC_025285 |
| TCONS_00052649 | lncRNA | upstream | 199781 | 22846383 ~ 22848196 (+) | True | XLOC_025285 |
| TCONS_00049919 | lncRNA | upstream | 271507 | 22768234 ~ 22776470 (+) | True | XLOC_025284 |
| TCONS_00049918 | lncRNA | upstream | 321557 | 22636670 ~ 22726420 (+) | False | XLOC_025284 |
| TCONS_00052650 | lncRNA | downstream | 45604 | 23096442 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00052651 | lncRNA | downstream | 45884 | 23096722 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00049935 | lncRNA | downstream | 45890 | 23096728 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00049936 | lncRNA | downstream | 45906 | 23096744 ~ 23180443 (+) | False | XLOC_025293 |
| TCONS_00052652 | lncRNA | downstream | 45934 | 23096772 ~ 23213329 (+) | False | XLOC_025293 |
| TCONS_00049925 | mRNA | upstream | 797 | 23029484 ~ 23047180 (+) | False | XLOC_025290 |
| TCONS_00049926 | mRNA | upstream | 4653 | 23029934 ~ 23043324 (+) | False | XLOC_025290 |
| TCONS_00049924 | mRNA | upstream | 27426 | 22999849 ~ 23020551 (+) | True | XLOC_025289 |
| TCONS_00049923 | mRNA | upstream | 53544 | 22984098 ~ 22994433 (+) | True | XLOC_025288 |
| TCONS_00049922 | mRNA | upstream | 71521 | 22935183 ~ 22976456 (+) | True | XLOC_025287 |
| TCONS_00049932 | mRNA | downstream | 12880 | 23063718 ~ 23085279 (+) | False | XLOC_025291 |
| TCONS_00049931 | mRNA | downstream | 12880 | 23063718 ~ 23085279 (+) | True | XLOC_025291 |
| TCONS_00049933 | mRNA | downstream | 41924 | 23092762 ~ 23096141 (+) | False | XLOC_025292 |
| TCONS_00049934 | mRNA | downstream | 41975 | 23092813 ~ 23096131 (+) | True | XLOC_025292 |
| TCONS_00049937 | mRNA | downstream | 170209 | 23221047 ~ 23237816 (+) | False | XLOC_025294 |
| TCONS_00049913 | other | upstream | 478871 | 22568987 ~ 22569106 (+) | True | XLOC_025283 |
| TCONS_00049893 | other | upstream | 986889 | 22059313 ~ 22061088 (+) | False | XLOC_025275 |
| TCONS_00049877 | other | upstream | 2017104 | 21025153 ~ 21030873 (+) | True | XLOC_025264 |
| TCONS_00049876 | other | upstream | 2017106 | 21025153 ~ 21030871 (+) | False | XLOC_025264 |
| TCONS_00049874 | other | upstream | 2367939 | 20679923 ~ 20680038 (+) | True | XLOC_025262 |
| TCONS_00049938 | other | downstream | 184830 | 23235668 ~ 23239458 (+) | True | XLOC_025294 |
| TCONS_00049946 | other | downstream | 622539 | 23673377 ~ 23673455 (+) | True | XLOC_025303 |
| TCONS_00049951 | other | downstream | 643318 | 23694156 ~ 23696013 (+) | False | XLOC_025306 |
| TCONS_00049958 | other | downstream | 669813 | 23720651 ~ 23720745 (+) | True | XLOC_025311 |
| TCONS_00049974 | other | downstream | 1044322 | 24095160 ~ 24101082 (+) | True | XLOC_025315 |
