RNA id: TCONS_00049931


Basic Information

Item Value
RNA id TCONS_00049931
length 1651
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_025291
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23063718 ~ 23085279 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttatttacaatgcaTTAGTGTGCTTGGTTAATAATATACAGAAATTTGATGCCATCAAGATTCTAGCTAAGAGGAGTGGTGTAAAGCAGACTGCTCTACCACTGAACAAGGAAGAGGTTTTAGATGTACCCATAAGAGGAAGGAGCATGAGAATGTTTCTCACGGATGACAAGATCTTATTTGCTCGACAGATTTTCCTGATATGAGCATTTTACACCGATTATCTCATATGATGAAAGTTAAAAACCGCTTGAAGGTGGTTTTAGTCCTGATGTTGCTCAGTTTACTGATTTTCCTGTTTATACAAAGTGAAGTGTTCGACAGGATGCCAACATTCCGTGCCAGTCCTGAACATGACATGGCCTCAAGGTTAAATATTACTTGTGAAGGAGCTGATCTCACCAGGCAGTTCGTGCCAAAAGATCAACTAAATGATCTACTTGAACGCAGAGAAAAGGAGTATAAGCAAAGTAAACTCAGGGTGAAAACAGATGCAGATATTCTCATCGCCCCGGCCAACTCTCCTCTACAATATCCTATAACAGGTTTTAGGGTAGTTCCTCTGAAGAAAAGTATGATACCAGGTCTTGCCCTTCGAGTAAAAAGGACAAGTGCACGAACAAATAGTGGGCAGTACAAGGTGTCTTTGAGTGTGATGAGTGGTGTGCTCTCAGTGGAGGATGTTCAGGATGGACAGCAGGTGGATGGACAGGGCCAGAGTGAACTTACCATCTCATCCAGCAACCTCACACAACTCAATGATCTGCTGTCCAGAGTGAGCTACACCAGCACCGTCTACCACATTAGAACATCAGACCTGGCCTGTTTGTCTTTTGAGGACCATGAAGCCAAATTTCCAATCATGATTAGGAGACCAACAGTTCCTGTTCTGTATGACCCAGGAGAagATATCAACTCACAGGTGACCATATTAACCAAGACGTTTTTGAGATACAAGGAGCTGAATGTCCTCATCGAGAGCATCCGGAAGTTTTACCCCAAAATCAAGATCATCATTGCAGACGACAGTCTAAACCCTGAACGTGTGTCCGGAGACAACATAGAGCACTTCATCATGCCTCCTGCACAGGGGTGGTTTGCGGGCCGAAATCTGGCTGTATCTCAATTGACAACAAAATACTTCCTGTGGGTCGATGATGACTTTGAGTTCTTGCATGAGACCCGGATCGAGAGTTTTGTGGAGATTATGGAAGCAGTTCCAGACCTAGATGTTATTGGCGGTGAGGTGTCTGGTGACCAGTTTTATTTCCTTCTGGAATATGAAGAGGGAGCTGAGCATGAAGGAGGAGGATGTCTAAGGCGTGTTAGAGGAGAGTTTCATCAGCCACTTTCAGGGTTTGATggatgccatcttgtggatggtgTAACAAATTATTTCTTGGCAAGAACTGAAGCCGTGCGAAGAGTTGGTTTCGACCCGTTCTTGAAAAGAGTTGGTCACACAGAGTTTTTCATCGATGGCCTTGGAAAGTTATTGGTAGCCACATGTAAGGGCTTCTGTATTGGTCATCAGACTCATCAGACATATGACAGCTATGAAAGTTACAGGAATCAAGAAAAAGAGGATGAAAAGAGAAAACTGGCTCATCACTTCTTTAAGAATTATCTCAACTGCATCAAGTACTGA

Function

GO:

id name namespace
GO:0006047 UDP-N-acetylglucosamine metabolic process biological_process
GO:0019276 UDP-N-acetylgalactosamine metabolic process biological_process
GO:0030259 lipid glycosylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9081 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process and UDP-N-acetylglucosamine metabolic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in membrane. Predicted to be integral component of Golgi membrane. Orthologous to human B4GALNT2 (beta-1,4-N-acetyl-galactosaminyltransferase 2).

Ensembl:

ensembl_id ENSDART00000140225

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049920 lncRNA upstream 183271 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052336 lncRNA upstream 215522 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA upstream 215522 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049919 lncRNA upstream 287248 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00049918 lncRNA upstream 337298 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00052650 lncRNA downstream 11163 23096442 ~ 23213329 (+) False XLOC_025293
TCONS_00052651 lncRNA downstream 11443 23096722 ~ 23213329 (+) False XLOC_025293
TCONS_00049935 lncRNA downstream 11449 23096728 ~ 23213329 (+) False XLOC_025293
TCONS_00049936 lncRNA downstream 11465 23096744 ~ 23180443 (+) False XLOC_025293
TCONS_00052652 lncRNA downstream 11493 23096772 ~ 23213329 (+) False XLOC_025293
TCONS_00049929 mRNA upstream 3597 23047241 ~ 23060121 (+) False XLOC_025290
TCONS_00049927 mRNA upstream 4430 23045214 ~ 23059288 (+) False XLOC_025290
TCONS_00049928 mRNA upstream 12874 23045222 ~ 23050844 (+) False XLOC_025290
TCONS_00049930 mRNA upstream 12880 23047977 ~ 23050838 (+) True XLOC_025290
TCONS_00049925 mRNA upstream 16538 23029484 ~ 23047180 (+) False XLOC_025290
TCONS_00049933 mRNA downstream 7483 23092762 ~ 23096141 (+) False XLOC_025292
TCONS_00049934 mRNA downstream 7534 23092813 ~ 23096131 (+) True XLOC_025292
TCONS_00049937 mRNA downstream 135768 23221047 ~ 23237816 (+) False XLOC_025294
TCONS_00049939 mRNA downstream 162046 23247325 ~ 23322787 (+) False XLOC_025295
TCONS_00049940 mRNA downstream 163263 23248542 ~ 23334469 (+) False XLOC_025295
TCONS_00049913 other upstream 494612 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1002630 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2032845 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2032847 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 2383680 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 150389 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 588098 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 608877 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 635372 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 1009881 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

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