RNA id: TCONS_00049936


Basic Information

Item Value
RNA id TCONS_00049936
length 944
lncRNA type lincRNA
GC content 0.36
exon number 4
gene id XLOC_025293
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23096442 ~ 23213329 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTAATTgtgatttgtttgttgtttgacgCTCTTCGGCCGATGGCATTTGATGTGTTGGATATTACAAAACAGCAGCCGAACAGTACACATCTACGCATTCCATGGAGTGTTTTTCCAGACTTGTGGTTGGACAAGCAGCAAGATTTGAATCTTCAAACAGAAACATCTGGGCCTGACATGAAGCTGACTCAACAGTGTCCCAACAGCTGATGTAATGCTGGCCTGCTGCAGAATGTGTTTGCATTGAAGGGGGCGATAGACCAAAGGACacactgaagggaaaaaaaaaagtcttgacaTAGGAAAGTCCGAGGCGCCACACAGATCTGAACAGATCTTCCAATGAAACTCAAAACAGTCTGACGAGTAGTTAAACCTACAGGAAACAGTAGCTCTTCAGCATTTATGTGGCTCATTATTGAGCTCTGTTCACCTTAGGACATTTCACACGTCATACACAACAACTAACCCTCGCTAACATGGACACATGTCTGCACACATATCTGAACTTGAGTTTAGGAGTTGTACTGAGATTAAATGTAATAATCCTAATGTAGTGACAAATTAAACACAACCATCTTTAATATATCAATGTGTTGAATAGATGTAATTTTGAGGAGACCTAAAGGGAGAATCCAAATTCAATTCATATATTTGAGCTGAGCTAACAAACATGATGCATTATTTGAGTTGGAATTAGGAAAGCATACTGTAGGTTTTTTCTCTTTATACTCTATTAATAGGTAGCATTGTGGAATAAGGCCCCCTAATTAACattaaatgtattaactaatgttagccAACAATGCACAATAaatttattcagtatttattaACTGAGATTACTGATAGTAGTTAATGAATTCAGTGATTTATAACTGTTAATTAATGTTAGCTTTGGTTCATTGAGTTacgtttataaataaattatttaaatctaaA

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0022414 reproductive process biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0045132 meiotic chromosome segregation biological_process
GO:0140013 meiotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0051304 chromosome separation biological_process
GO:0051307 meiotic chromosome separation biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0000280 nuclear division biological_process
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000157257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049920 lncRNA upstream 216297 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00052336 lncRNA upstream 248548 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA upstream 248548 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049919 lncRNA upstream 320274 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00049918 lncRNA upstream 370324 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00052654 lncRNA downstream 226028 23406471 ~ 23407478 (+) False XLOC_025296
TCONS_00052655 lncRNA downstream 226028 23406471 ~ 23411521 (+) True XLOC_025296
TCONS_00052656 lncRNA downstream 337516 23517959 ~ 23524650 (+) False XLOC_025298
TCONS_00052657 lncRNA downstream 337689 23518132 ~ 23524387 (+) False XLOC_025298
TCONS_00052658 lncRNA downstream 337693 23518136 ~ 23524387 (+) False XLOC_025298
TCONS_00049933 mRNA upstream 603 23092762 ~ 23096141 (+) False XLOC_025292
TCONS_00049934 mRNA upstream 613 23092813 ~ 23096131 (+) True XLOC_025292
TCONS_00049932 mRNA upstream 11465 23063718 ~ 23085279 (+) False XLOC_025291
TCONS_00049931 mRNA upstream 11465 23063718 ~ 23085279 (+) True XLOC_025291
TCONS_00049929 mRNA upstream 36623 23047241 ~ 23060121 (+) False XLOC_025290
TCONS_00049937 mRNA downstream 40604 23221047 ~ 23237816 (+) False XLOC_025294
TCONS_00049939 mRNA downstream 66882 23247325 ~ 23322787 (+) False XLOC_025295
TCONS_00049940 mRNA downstream 68099 23248542 ~ 23334469 (+) False XLOC_025295
TCONS_00049941 mRNA downstream 68099 23248542 ~ 23348084 (+) False XLOC_025295
TCONS_00049942 mRNA downstream 68261 23248704 ~ 23327611 (+) True XLOC_025295
TCONS_00049913 other upstream 527638 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1035656 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2065871 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2065873 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 2416706 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049938 other downstream 55225 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 492934 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 513713 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 540208 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 914717 24095160 ~ 24101082 (+) True XLOC_025315

Expression Profile

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