RNA id: TCONS_00052659


Basic Information

Item Value
RNA id TCONS_00052659
length 5942
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_025298
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23517959 ~ 23524650 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCGGTTTACTCATCTTTTATTGTCACATTCATATCTATGCTCTGTATTTTTTACAAGGAGTTCAAAACAATTGTGGATGAGAATCAAAGAAAAATCAGGCAGGCAGAGGCTGAAAGTCCTGTTAATGTCTGTGGCACCTGCTGAAAGAAGGGTGAAGGGATAAAGGTAGTCTGGTAAAGAGATCAGATAGTGAAATTGTCATAGTTTTTCCGTTTATTCCCCCTCCCGCATTTCCATTTAACCCATTACCAAATTCACGTGAACAATTTCAAAACAACAGAAGAGaaaaatcatcatcatctttgGAAGTAAAAGATCTATTCACTACAGTATATGGAGATGCTGCTACCCAGATGCTTAagtcattgttattattgttattattaatataatattattgatTCATTTAGCTTAACATTGTAACTTTTTGTGTCCTTTTTTAGTTTTACGATCTGTTCTATCGGTTTGTCTTTATTCTAAGAGGTAgatcaacaaaaaaagaaaagaaaaaattgaAAATACATGATTATAGGTGTCATGCCTCTTGATTCAGGCCGTTAAGTCAAAAAATGGGACTACAAGTTGAGGACAAGATGTTAGTAGAAGCTTAGGGCAGAAAGTGCAGATTTATTGCCAACTTAAATCTAGATTCACCCCCAAAAAAGTGAGACCGGTTTCAAAATCAGCAGCTTCTAAATGGGGAGGATGGTACTTGTGGGGTCAAGGCTGCATGGCGTGGAGGTAGTGTGGTGCCATCAAGGTGGGAAAGGACATAGATGAAGGAGTGCAACAGGCACAAATGTGTGTTCATCTTTACAGAGGTATCGTTAGTCACCCTACCAATGCTGGCCTGGATACGTTTGTGCCATTAGTTTCATAATAGTCAGGGCCGTTCAATGCTGCCTTCATGTGCAATCAGAGTTGTTGTAAATATAGGTTTCCTTGTCAGAAATTGGAGAAGCATAGCATCAAGAGTTGCATTTACAATTGGGAAGCGTCAAGAGTTTCCAAACTGGGTGGAAagaacattttttacattaaattaaatggtTGTTTACAGCAACAGCTATGTTACTGTAATTTCAGGAATCCGACTACGTTTAATCCCTCTTACAAACTTATAACCACTATTAAAATTGGGGATTTTCTGAAAACTTTGACTGTACCAACTGACTGCCATTGAATCATTAAGGTGTTATGTTTAaaagggctgcatgattaattaAAGGCCATTGTGTGCTCAtcttcactctcagaaataaaggtatgcaagttGTCACgggtgataccttttcaaaaggtatacaTTTGTACTGAAAAGGTCCATAtcggtacctcaaaagtatttattagtacctacaaattttaagaggaacacttttgtacttcttaggtactaatatgtaccgttgaggtattaatatggaccttttacttaaaaatttgtatctttttaaaaggtaccaccccagtgacagggCTTAAAGAGGTAGTTTACCCCAAAAAACTGTGCTAAAGAGACAGGGAACGTCGTTTCATttttcatacactctcagaaatgaaggtacgGGAGCATTCGCTGGGCctttaccttttcaaaagatacatatttataCCAATAGAGTCTGCAGTAGTACCtcaaggtacatattagtacccaaatgtacctttgaggtacctaTATGGACCCTTCAGATACAAATAtggactttttgaaaaggtactgcctgAGTGATAGCTCTTGTACCCATATTTCTGAGAGAGTTCCAAAACTATATTTCATTGTCTTTTCATGAGATTCCTACTTGTAAATACAACGTTGTGCTGGCATTCACACCAGTCTAACTCATAAATACAACACTCCTGCCATGACCTGAATGCACAGTAAATCACGACGTGGAGAGAATTTTAGTTTAGCATCATTTCACGGGTTCTTCAACCTTCCTCCTCCTGTGCAAGCCATCATACCACAACATCCATTCCCTGTTGTGTCACCCCATCCCGAAGGAGTCCCCGCTCTAAGCTCGAGTAGTTTTCTATCCAAACGTCTAGAGAaattaaaagctaaaaataaattaaaactcaaAAATGTAACATGCACTTTCGCTCTCGTCTGCTTGATAAAACAATCTTATGGCTAAGTCTTGAGGTAGCGTTCCTAGTTATGTGAGGTTTGAGACGTCATTTGTAGCACCCAAATATTTTCCTTTAGGAGAGGCCAGAATCTAGCATGGTGAGATACAACAGTGGCATGCAACGTcgatatgatgatgatgatgaccacAACCAGCTAAGCTGCTCTTCATACTGTGGTCTACATGTAGATCTACGCACTGCAATGCAACTTTTCCCAGTGGACACTTAACAGTCCGTGCGACAAACACCGTTTATGTGACTTGTCACAAAATTGCATAAGTAAACAACATACTATCTCTTTCCGAAAAGCTCAAGTATGCTAATGAAATGGTTGTACTGTTTTGTTCAAGCCCTCACCACTGACAAAGCATGGAGGGCCTCGATATATTGAAATGAAAAGCGAAAAGTGCCAAACAGGAGGCCAACTCACAGGGGAGCGTGCATATAGGCAATGCATCCGTTCCTGACTGTGCAGTCGCAGTTAGTTCCTTTATCCTGGAGTACATCAACAAAACATAAAGAGAACCCCGGTTTGGCACAGGTATTACGTGAAGTGTTAGTATTTCACTCGTAGCAGTGTAAGAGGTGTCTGTGCATAAAGAACTCTGATCGAGgagaaactaaactaaataaatggaGACGATCTGataaagagaaaaacaaaattgcaaagaaatttcaacatcaaacgactgaactaaacagaaaaaacgGTCACAAACGAGGCCAGCGTGAGAGAGGGCGTTCTATTCCAGAACTGAAACGACACGTTGCTCGCCAAAGCTAATGTCTCAGATACtatcgccaaaaaaaaaaaataaaaacaagtggaTGAAGGAAGCGAGTGGTGTCAAGGGATGAAAGGTAAGAACACCatgggggggaaaaaaagaggaaGGGGACACATCTAAAACCTTGGGATCTTTACAAAATGTCCACCCATCCACTGATACCATCCCTCTCATCGCTTTCACCCAAAGGATAATCCTAAAATagacaaaataatgaaaaacaaaatgcaattaCAATAACATACCTACTATTTCGCTTTGTCACAACTATGTTAGTTCTCGGAGATCTGCGGTTATGTTAATATTTCTCGCTcacatattttttgtcttttattgatGAAACAGTTAGCAACCAGATGTCAAGCTTgctgtcaaaaaagaaaaaaagaagacgtAAAAACAAAAGGCTGCTGCAGTCTGAACAGAGCagaagtgtgtgtgagtgcgtttGACAGAAATCTATGGGCTGGAACAGGACAGATAACTTCATTCTCGCCTGAAGAGCAGTATGTGAGATGTTGACAAGTTCAGTCCTCAAGCAGAAAACAGAAGACTGCCATCTAGTGTGAAAAAGGGGAagctcaaacaaacaaaaaaatatataacaaaacaacaaaacaaaataaaagacctTGACCAGTTAAAGCATGTGAACATTCTGGCAAACCCTTCTGAATGGAACGTGGAAAAGATGCGGTCTGGCAGTGTCCATCCATCTTTAACGGTTAAAAGTCTTGCCATCCTTTATCCAATTAgtattttattctaaaaaaatacaaagatttttttttaaatctgattgcTTTGTTGAACAaattatttacagttttcaaTTTGAGAGATGGTGAATGCTtcagtttttgcatttttttggcTCCCGTTTTTCTTGTATGTTCTCAGtcggtttttaaaaaaatgagtaagACTGAGAGCATAGAGTGTTTTCCTATGTTTCTGCCTTTTTAAAACACCCAAACCACTtccccaacaacaacaacaaaaaaaattaacacgtAACTCAATCAGAAAACGCAACCGCGCACACTTGCACAGGACAATGGGGAAGGACGAGACTCCATCCgtaacaaacaaaaagaaaaacaaagatgtTAAATAGTTCACATTCAGCGTCTTGGGGCTAAAGATAGTTTACACGCTTTCATTTTTCAAGCCCTTTCAAGTAAGTTAACCAATGACGTCCTTCAGTGCAGAATGATCAAGATCACACCACAGTATTGGCAAAAGAGTAACTTTTAGTTTTCTACCGTCAGCTTGTATTACAAACACTAATACTAAATCCTGTGGTATGGCAGCGTTCATTATGCACCAGAATAAGATGGCACGATTCGTCCTGTGTCCCATTGACCAGTGATATCAAGTGCGGCTCTACAAGGACTCCGAGGCTGGTCTAAAGACCGCCTAAACAATGAATCTGGAAGTCCTTCTGAGCTCAGGTGAGGAAATCCCCTCAGTTACACTCACGCATACAGTCATACcaaaaaggaaaataaaggaaaaaaaataaaaatatttcttccttaaaaaaataaaatattcaagaCTATCAGCTTTTATATAAAACACCAGCaagcacaaaaaaagaaagaaaaaaaaagaatttaaaagaaaaaagaaattaggAATACTGAGGTAACAATACCCTGAGGtaggttttttgtttttcttaatttcatttttatctaATCTGTTCTAGGTTCAGTGAGAAAGGCCAGCACTCTGGCAACCTCATCGGCAAATATCGAACAAAGTGGGCGAGAGAGAGCACAGAGACCACTGTACTGTCACCAGTTCTTCTCCTTTGACCAACAGGTCTATCATTCAAACCTGGCATTCAGGACAACCGTCCTCACGTGATTCTATTGCTGCATATTTAGCAGCACATTTATTCTCAGGAAGAATGCAGAACAGTTCATCTGAAGGCCAGGTTTATAAATGACGATTGCTTCTTAAATCACACATTCCTAACAAGAAATTGCTTTCTAAAAGATTCTTGTTTTCTGATTTTTCCCAATGTCTGCCTGCTCTAATGCAATGAGGGGCCAGGTTAACTcacatatcatatatatataatatatataaaatatgccgTTTGAGTGTGAGCGGCGCTGCAGCGATCATCGCTGGCGTGATTTAGGGCGGGATTTGTTCGTTTTCCACACGTCAAAGCTGAACCACTGCAATACAACTGCAGAGGTCAGCTTTAGCCCACACACTTACTGAACTCTCGCCGCACGTCCCACCAGCCAAACAGCACACAGCCTAAATAGAAAGAAGTCTCCAAAACAAAAGAGTGGCACGACCCTCTCAAGCTGCGTAGTTGATTGGCAACGTTGACGTGCAGCATCTAAACATAAAGTCATGAAGATTATATTTACAACCtcattttttcatctttttttcatctcgtCACCCCCACAGTTAAGCGTGAAGGATTTCAAGAGCAGTGTTAACAACTTTGGCCCCTCCCCTCAGCTCTGAAAAACAGGGAGAAGTCACCTGACTGGTGGCTCCGCCCACAAAGAACTGTGATTGGctctctgctctctctctctccatctctacCTCACTGCATTTCATTAATAATACCTCTGAATAAACATTTCTATACATATATctctatctttaaaaaaaacacagttaaaaAATCTGAAGTGACTGCTGATGGCTGGGGATCCCAAACAGCTCATTTTGAGGGACCATCATTATGCCCTACTCCTAATAAGCGGCTACCATGTAAAAAAGCTCTCCGCAGAGGGCGCTCCGCTTCGACGGACATCCTCGCCATCCTCAGTCACTCCACCTGGCCTGGCATCTGGTCTCTGTTTTCTAATtatctctctttaaaaaaaaatttaaatcacacGTTTTTCTTGTTCATATTCACTAAAGTcgtgtcctctctctctctctctctcaggctctattttttgtcttttttgtctttttaattcCCTCTCAGCTCCCCTGTCTACCGCTGGGTCTGTGTgtcactc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042693 muscle cell fate commitment biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052655 lncRNA upstream 106616 23406471 ~ 23411521 (+) True XLOC_025296
TCONS_00052654 lncRNA upstream 110659 23406471 ~ 23407478 (+) False XLOC_025296
TCONS_00052652 lncRNA upstream 304808 23096772 ~ 23213329 (+) False XLOC_025293
TCONS_00052653 lncRNA upstream 304808 23113347 ~ 23213329 (+) True XLOC_025293
TCONS_00049936 lncRNA upstream 337694 23096744 ~ 23180443 (+) False XLOC_025293
TCONS_00052660 lncRNA downstream 80091 23604478 ~ 23616801 (+) True XLOC_025299
TCONS_00052661 lncRNA downstream 140774 23665161 ~ 23668197 (+) False XLOC_025301
TCONS_00052662 lncRNA downstream 142000 23666387 ~ 23668197 (+) True XLOC_025301
TCONS_00049952 lncRNA downstream 169769 23694156 ~ 23696208 (+) True XLOC_025306
TCONS_00052663 lncRNA downstream 406059 23930446 ~ 23967966 (+) False XLOC_025313
TCONS_00049943 mRNA upstream 21914 23488652 ~ 23496223 (+) True XLOC_025297
TCONS_00049941 mRNA upstream 170053 23248542 ~ 23348084 (+) False XLOC_025295
TCONS_00049940 mRNA upstream 183668 23248542 ~ 23334469 (+) False XLOC_025295
TCONS_00049942 mRNA upstream 190526 23248704 ~ 23327611 (+) True XLOC_025295
TCONS_00049939 mRNA upstream 195350 23247325 ~ 23322787 (+) False XLOC_025295
TCONS_00049944 mRNA downstream 129846 23654233 ~ 23655834 (+) True XLOC_025300
TCONS_00049945 mRNA downstream 144880 23669267 ~ 23671863 (+) True XLOC_025302
TCONS_00049947 mRNA downstream 152964 23677351 ~ 23682436 (+) True XLOC_025304
TCONS_00049948 mRNA downstream 163522 23687909 ~ 23690481 (+) True XLOC_025305
TCONS_00049949 mRNA downstream 167460 23691847 ~ 23695980 (+) False XLOC_025306
TCONS_00049938 other upstream 278679 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049913 other upstream 949031 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1457049 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2487264 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2487266 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049946 other downstream 148990 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 169769 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 196264 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 570773 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other downstream 571570 24095957 ~ 24096036 (+) True XLOC_025316

Expression Profile

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