RNA id: TCONS_00052662


Basic Information

Item Value
RNA id TCONS_00052662
length 982
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_025301
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23665161 ~ 23668197 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGTATTCTTGCTACACCTCAAACAATGTTTGCAAATCAGACCGACCTAAGGAAATAATCTGTTAATTATTCAACCACAATCTTGAACTTTATTAGGGGGAAAACACTGAATTAGCTCACTCTTCTCTGCTCCACACACCAGACACATGCTATTTAGAGACGGCTTGGCAGTAAAACTTTACAGCAAATGGGGTGGCTTGGTTGTCATGGTTACAGTTATACGAGTTTGACCGAAGATCTTCTCACCATTTGGAAGGGGCCAGCGATTCTGTTTGTGATTATAAAACCGGAATGTGTAGAATATATGAAAAATCTACCAGGTTTCCTTTCCTTTCTCGTTATTCTAAAGGCAGTCGTGGAGGAATAGCATGCGGTCTTATGGATGTGTTCAAAAAGCGTGTTAGTCAGAAAATGGCATTCAGAGACCATGGCGGTCAAAAAATGTGAAATAGTTTTAGTGCAGCACGCCAGACAAAAAGTAAACAACTGGTCGAGACAGGTGATGTCAACGTCAAACTTTTACAGCAAGCCATCATTCGTGGGACATCGAAGGCCAAAGGCCTTTTCGCTCCGAAGCTTTTTGGATTTATGAAAACTTTAGGAAACatatttatacagttttattCTACAGATGTAAAAAAGAACGACTGGAGCACAATATGCACAATTGTTGAAACAAAAAGACAAACTCACGCTTCTAAAGCCTTCATCGGTGTAGTAATTATTTAACCGAAAAAAAAGCTAACAAGCTTGCATGCTGTTATTTTCAGAACGTTTTGTTcgtcttttaaataaaaaaataacaaataattagtcataaattaaatgcatgaaatatcataaattaaaaactaagAGCAAGCTGTAAAAAACGTATTGTtcgactttttaaaaatataaatttgttattaaatgaccaacaaataacataaaattaCCAAAATTAAAAGATCAGACTGTTATATTTTTAGAACGTTTTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052660 lncRNA upstream 49586 23604478 ~ 23616801 (+) True XLOC_025299
TCONS_00052656 lncRNA upstream 141737 23517959 ~ 23524650 (+) False XLOC_025298
TCONS_00049952 lncRNA downstream 25959 23694156 ~ 23696208 (+) True XLOC_025306
TCONS_00052663 lncRNA downstream 262249 23930446 ~ 23967966 (+) False XLOC_025313
TCONS_00049968 lncRNA downstream 266695 23934892 ~ 23967966 (+) False XLOC_025313
TCONS_00052664 lncRNA downstream 266744 23934941 ~ 23965038 (+) False XLOC_025313
TCONS_00052665 lncRNA downstream 266767 23934964 ~ 23962671 (+) True XLOC_025313
TCONS_00049944 mRNA upstream 10553 23654233 ~ 23655834 (+) True XLOC_025300
TCONS_00049943 mRNA upstream 170164 23488652 ~ 23496223 (+) True XLOC_025297
TCONS_00049941 mRNA upstream 318303 23248542 ~ 23348084 (+) False XLOC_025295
TCONS_00049940 mRNA upstream 331918 23248542 ~ 23334469 (+) False XLOC_025295
TCONS_00049945 mRNA downstream 1070 23669267 ~ 23671863 (+) True XLOC_025302
TCONS_00049947 mRNA downstream 9154 23677351 ~ 23682436 (+) True XLOC_025304
TCONS_00049948 mRNA downstream 19712 23687909 ~ 23690481 (+) True XLOC_025305
TCONS_00049949 mRNA downstream 23650 23691847 ~ 23695980 (+) False XLOC_025306
TCONS_00049950 mRNA downstream 24265 23692462 ~ 23695866 (+) False XLOC_025306
TCONS_00049938 other upstream 426929 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049913 other upstream 1097281 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049893 other upstream 1605299 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 2635514 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 2635516 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049946 other downstream 5180 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 25959 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 52454 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049974 other downstream 426963 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other downstream 427760 24095957 ~ 24096036 (+) True XLOC_025316

Expression Profile

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