RNA id: TCONS_00004728


Basic Information

Item Value
RNA id TCONS_00004728
length 896
RNA type mRNA
GC content 0.53
exon number 5
gene id XLOC_002541
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4940767 ~ 4961929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGTTGTGTTCCGGTTCTGCGCGGTGTCCGTCAGCTGACAGATGTTTGGCTCCTCGGTTCGGTTCGTGCGGCAGTGAAATAAAAACAGCTGCGCGATCAGAGCAGTGCAGCGCCATGAGCAACGGCGGTACCCCGCGATCACTGCCCTCCTCCGGGCAGAAGTCCATCCAGGAGATCTGCCACCCTCTGTCCGCCGAGGAGAGCGCACGGAGCCGCAGCCCAGATGTGCTGAACCCCGGAGAGAAGGACCTGAGTCTGCCCAATGGGACTCCAGTAGACACATCAAGCCCCGCCTCCTCTTCATCGCTACTAAACCGACTGCAGCTCGACGACGATTTGGACGCAGAAACGCGCGACCTGTTTGTGACTGTAGATGATCCTAAAAAGCACGTGTCTACAATGGAGACGTACATCACCTACAGAGTCTGCACAAAGACCACCAGAACAGAATTTGACCTGCCGGAGTACTCGGTAAGGCGACGCTACCAGGACTTTGATTGGCTGAGGATAAAATTAGAGGACAGTCAACCAACACACCTTATTCCACCTTTACCTGAGAAGTTTGTAATGAAGGGAGTGGTGGACCGGTTTTCAGAGGAGTTTGTGGAGACGAGGAGAAAAGCGCTAGACAAGTTCCTCAAACGTGTAGCAGATCATCCGGTGCTCTCCTTCAACGAACACTTCAACGCTTTTCTCTCAGCAAAGGACCTGAATAAGCGTCAGGGTCTTGCTCTGCTGACTAAAATGGGGGAATCTGTGAAGTACGTGACGGGTGGTTATAAACTGAGAGGACGGCCGGTGGAGTTTGCTGCTATGGGGGAATATCTGGACATGTTCACACAGAAACTGGGCACCATTGACAGGATAGCACAAAGAATCATTAAAGAACAGACAG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-330 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Orthologous to human SNX30 (sorting nexin family member 30).

Ensembl:

ensembl_id ENSDART00000146066

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005746 lncRNA downstream 31301 4919323 ~ 4922051 (-) True XLOC_002540
TCONS_00005985 lncRNA downstream 134746 4812304 ~ 4818606 (-) True XLOC_002539
TCONS_00005984 lncRNA downstream 135041 4812304 ~ 4818311 (-) False XLOC_002539
TCONS_00005745 lncRNA downstream 370332 4582362 ~ 4583020 (-) True XLOC_002538
TCONS_00005983 lncRNA downstream 370343 4573554 ~ 4583009 (-) False XLOC_002538
TCONS_00004732 lncRNA upstream 42063 5003992 ~ 5010275 (-) False XLOC_002543
TCONS_00005986 lncRNA upstream 56629 5018558 ~ 5024285 (-) False XLOC_002543
TCONS_00004741 lncRNA upstream 90933 5052862 ~ 5058823 (-) True XLOC_002544
TCONS_00005987 lncRNA upstream 259986 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00005988 lncRNA upstream 259986 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00004726 mRNA downstream 578162 4367430 ~ 4375190 (-) True XLOC_002536
TCONS_00004725 mRNA downstream 637337 4279521 ~ 4316015 (-) False XLOC_002535
TCONS_00004724 mRNA downstream 637337 4279521 ~ 4316015 (-) True XLOC_002535
TCONS_00004719 mRNA downstream 1525722 3419832 ~ 3427630 (-) False XLOC_002528
TCONS_00004729 mRNA upstream 7705 4969634 ~ 4980150 (-) True XLOC_002542
TCONS_00004730 mRNA upstream 38694 5000623 ~ 5016997 (-) False XLOC_002543
TCONS_00004731 mRNA upstream 40218 5002147 ~ 5020378 (-) False XLOC_002543
TCONS_00004733 mRNA upstream 55287 5017216 ~ 5022176 (-) False XLOC_002543
TCONS_00004734 mRNA upstream 55287 5017216 ~ 5024520 (-) False XLOC_002543
TCONS_00004723 other downstream 1184586 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 1446698 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004703 other downstream 2077617 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 2077617 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 4613325 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004736 other upstream 56629 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 58257 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 58348 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004756 other upstream 988534 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 1455776 6417705 ~ 6431288 (-) True XLOC_002557

Expression Profile

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