RNA id: XM_036955672.1



Basic Information


Item Value
RNA id XM_036955672.1
length 7445
RNA type mRNA
GC content 0.47
exon number 24
gene id abcc3
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 6836679 ~ 6893619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAATAAACTACGAGCTCCACTAGTGTGTTTGTTGAAAGTCTCTGTATGTGCAATAACAAAAGACGGTAAAAGAGAGGGAGCGACCTGTTAACGCCGGGAAAAGATCATTCGTTCGTTGTACCGAAGCCCCGTGGACATGGAGCGCTTATGTGGACCAAAACTCCCGTTCTGGGTAGCCAATCAGACGCTCCACACGGACAGTCCAGACCTGCCGGAATGTTTCCAGCTGTCAGTGCTGTCATGGCTGCCTTGTGTGTACCTGTGGCTTGCTTGCCCTCCCTACCTCTTCTACCTCCAGAGGAACAACAAGGGTTATATCATGATGTCCATCCTTAACAGAGTGAAAACGGTCTTTGGGTTGGTGTTGTGGATTGTGTGTTGGACAGATCTTTTTGGCACCTTCCATGAGCTGCAGCAGGGGGACTCAAAGCCACCCATCTACTTCGTCACTCCACTGGTGGTCGGCATGACGATGctGCTAGCTTTGTTTCTGATACAGTTTGAGAGGTTGAGGGGGGTCCAGTCTTCAGGGATTCTATTTATATTCTGGTTCCTGTCAGTGCTGTGTGCCATAGTGCCTTTCCGCTCCAAGATTCTACAGGCCAAATATCAGAGTGAGATTTCAGACAAGTTGCGTTTCACCACATTCTATTTCTACTTCAGCCTGATCGTAGCCGAGCTTATCCTCTCTTGCTTCAATGAGAAACCTCCACTTTTCTCCAACATAGACACAGACCCCAATCCTTGTCCTCAATCAACTGCTGGTTTCCTCTCCACTATGACCTTCTGGTGGTTCACTAGCATGGCCATCAAGGGCTATAAGAACCCTCTGGAAGCCAAAGACCTGTGGTCACTGAACAAGAGGGACAGCTCAGAGGTGGTCGTCCCCAAGCTACTGCGGGAGTGGGAGGTGGAGCAGGCCAAGACTCacagTGCTGTGGACCAGTCCACCCAGGCTCATTTCTCCAAACCTACCCCAGCGGGAGAGTCCAACCATGTAGGGGGGGAGAGCAGTCCTgaggaggtggaggtgttgctgtccAAACAAAAAGACCCCAAAAAGCCCTCCTTCCTCCGTTCCCTCATCAAGGCCTTTGGACCCTACTTCCTCATCGGATCTGCATTTAAACTCCTACAGGACCTCATCACCTTCGTCAACCCACAGCTCCTCAAgttATTGATCTCATTCACGAAGCAGAAGGGAGCTCCCACCTGGTGGGGATACGCCCTGGCCTTCCTCATGTTCTTCGCAGCCTTCCTCCAGACTCTCATTCTGCACCAACACTTCCAGTACTGCTTCGTCACTGGGATGAGACTTCGCACCTCCATCATAGGAGCCATCTACaggaagtCTCTGATTATCACTAACGCGGCCAAGCGTACATCTACAGTGGGAGAGATAGTCAACCTGATGTCAGTGGACGCTCAGCGCTTCATGGATCTCACCACCTTTCTCAACATGCTGTGGTCCGCCCCACTTCAGATCATACTGGCACTATACTTCCTGTGGCAGaaCCTGGGTCCGTCGGTGCTGGCTGGTGTTGCTGTGATGATCCTCCTGATCCCCTTAAATGCTGCCATCGCCGTGaggacacgagcctaccagGTGGAGCAGATGCAGTACAAGGACGCTCGCATCAAACTGATGAACGAGATTCTGAACGGGATCAAAGTGTTGAAGCTGTACGCCTGGGAGAGCTCCTTTAAAGAGAAGGTTCTGGAGATCAGACAGAAAGAGCTCAATGTGCTCCGCAAGACGGCCTACCTCGGTGCTCTGTCTACCATGGCATGGACCAGTGCACCTTTCCTAGTTGCCTTGACAACGTTTGCAGTGTATGTGACTGTGgataaaaataacattttagaCGCGGAGAAAGCCTTTGTATCTTTGTCTCTGTTCAACATCTTACGGTTCCCTCTCAATATGTTGCCCCAAGTCATCAGCAGTATCGTACAGGCCAGTGTGTCCCTGAAGCGTATCCAGGACTTCCTGAGTCATGATGAGCTGGACCCAGAGTCTGTGGACCGGACTAACACTGCCACAGATAGCTCAGTGACTGTTGTCAACGGGAAGTTCACCTGGGCAAAACAAGATCCTCCTGCTCTACACAATATAAACCTGATGGTGCCCCAGGGCTCACTGCTAGCGGTGGTAGGACATGTCGGCTGTGGAAAGTCTTCTCTGGTGTCAGCTCTattgggagagatggagaaaatggAGGGAGACATCTCTATACAGgGTTCGGTGGCCTACGTCCCGCAGCAAGCCTGGATCCAGAATGCCACTCTGAGAGACAACATCCTATTTGGCAAGGCCTACAACGAGCACAAGTACCGCTGTTGTCTGGATGCCTGCGCTCTGACCCAGGACCTGGAAGTACTACCTGGAGGAGACCTGACCGAGATCGGAGAGAAGggaATCAACCTCTCAGGTGGTCAGAGACAAAGGGTGAGTCTGGCCAGAGCTCTGTACAATGAGGCAGACGTCTACCTGCTGGACGACCCTCTCTCTGCCGTGGACGCCCACGTGGCCAAACACATCTTCGACCAGGTCATTGGCCCAGAGGGGGCGCTGCAGGGCAAGACGCGTATCCTGGTGACGCACGGCATCAGCTTCCTGCCGCAGGTGGATAACAtagtggtgatggtggagggCAGGGTGTCGGAGATGGGCTCGTACCAAGAGCTGCTCAAACAGAATGGGGCATTCGCTGAGTTCCTCAGGAACTATTCCCTGGAGGACATCATCGAGGAGGACGAGGCAACAGAGGCTTTGATTGACGAAGAAGAAAACTTCCCTGACGACGCCCTTAGCAACCATACAGACATGGTGGACAACGAACCAGTGGTCAATGAGGCAAAGAGACAGTTCATAAGgcagaTCAGCATCATCTCAGGGGACCTGGAGAACCCAAAGAGCAGGTCTGTCCGGAAGCGTCTGTGCAGCGAGAGGAAGCATGCCGAATCTGACTCCGAGAAGAAACTACCCAAGGTGGAGAAACTCATCCAAGCAGAGACCGCTGAGACAGGCAGGGTGAAGAGCAAGGTGTTCTGGGAGTATGTCAAGGCAGTAGGGCCTCTGCTGTCCCTTTTCATCTGTTTCCTGTACGGCTGCCAGAGTGCTGCCTCCATCGGAGCCAACGTCTGGCTGAGCCAGTGGACCAATGACGCAGCTCAGAACGTGACCCAGGAGAATGTCAGCAtgagggtgggggtgtatgctgCTTTGGGCATGGCGCAAGgTGTGCTGTTGCTGGCCAACTGTCTGCTGTCCAAGGCCTACAGCATGCTGCGGGCAGCCGAACTCATGCACCTCCACATGCTCCAGAGGTTGCTGAGGGCACCCCAGGGCTTCTTCGAGAGCACCCCCACGGGGCGTGTACTCAACCGCTTCAGCAAAGACGTGGACATTATAGACTCGCACATCCCAGACAATATTGATATATGGATGCGCACTTTCTGGTACACAGTGAATGTGCTGATCGTATGCTCTGCCCTCACCCCTCTGTTCCTACTAGTCGTAGTGCCGTTAATGGTGTTCTATTGGTGGGTCCAGGTAAATAGGACACAACTCATTAATAActctaatacagtgtgtgtgtgtgtgtgggctggtaGATTGCTGCTGTTGTGTGTACAGTTTGCTGTGGTAGATGTGACCATCATTCTCGTTGTCTTAGTGTTGCAGTGGGGTTTGCTTGGTGGGTAGACACAGTAGCAGACTAGCGAGTGGAGGTTTAGTGTGTAGgctaaggctccagtctctagtTGTTTGGTTTGTGTGGAACGGCTGTTCTTCTAGTTCACACCACCCCAAGGTATCTGGATGTGGAACCTCAGCATATGGCATTAGAACCAAGATTGTTGATATTCCATTGACTTGGCTTCACTATGATAATTCGATGCACTGAATTTTGAATTTGACTGAATCCGTGCCGGTTAACAACCGGGGGTAGATGGTGAGCAGCCGTTCGGTATCTGTATTGaatactgttgtgtgtgtgtgtgtgtgtgtgtgtgggaggggataGGCATTATCGTGTCATCATGGTTCCTGAATGTTCATTCCGACGTTTAGAACTCATCCTAATCAGTTAAACTTCAAATCATCCAACATCCATTTAGCATCCATGTGTTGTGAATAACTGTTTGGCTATCTACTACTAACGCACTAAGATGATTTGGCTTCTTAAGGTCCCTATGGCTTTGTAatgtaatgtgtttttttttttttttgcgtctGGAGATTTGACCCACAAAATTACGACACTTGATAGGAGCCACAAGGCTTCTTCAAATTGCTGGTCAATGATAGAATGTGTTGAGCATCAATTGACATGACTGCTCTTGATCTGATTTTCATCTGTTTGAAATGTCCACGCACCTGCAGCACACTGATTTCATTTGAAGAAATCGACAAGCAATCACCTCCTTTCAACCTTCCAATCAGTTTGATTGAGAAGGTCTAAAGAGACTACGTGATCCCGAGCGAAAAATAGTTTAGTTTGTAGTATCTGCATTTGGATGTTTCGCTGAGGGCCATTGGGGCTTGTGCTTTCCAGGAGTTTCCAGAAGTTGGAAAACTGATGTATTTCTGGAGCCCGACCGATATATCAGTTCACCAATATTATCGGCCGATATTGGCCTTTTACCACTATCGTTATCAGATGATAATTCAACCGTTAACCGATTTTTAAAAAAATCTCATGCCTTTCTGAACAAATGTGGCCGTTTTCAGAACGAGGGGACATATTTGTATACATTCTTGTCACGTATGAAATCAACATTTGAAGCATTGTTATTGGACAATTGCACTTTTGAATGGCAATTTATGCAAATTCAGTGAGTAAGACATATCGGTATGTTTTGTCCCCTAATAAATCAGAATCTGACCCCCAAAAAAGCATTGATCGGGCTGGGCTCTATATAGTGAATGTAAGCAGGGTTCTGTGTGTTCACATGTGCCTCTGTGAGATGTCCGCTACCTGGAACTGCAGCGCTGTTGACTGGGTCGCCATGATCTAACACCCGCATATATTCCTTCTCCTTTTTGATTTATCTGCATTGTCTCTTATTTACCTTCTCCGTGTGTCTCTCAATCATTGAAAAAAGGGCTATTTCTTACTCACTGGGACTTTAATTATTCTATATGTGTGAATTTGACCTTTAATGATGTGTTAGTGTTTAAAAGCCAACCCGTACGTACACTGCAATATTATGATGGCATTTAAGCACTAATGGACATTGAAGTGTTCATTTTATCAAGTGTAATCAAATGTGTTTAGTATTGGATGATTTATACATTGATTTGATAATCAAATTAAATATACCTTATTTCGTAGACTGGGCCGGGTGGAAAGAGTATCCGCAGAGTTCAAGAACTGGCATTATCATAATTAATGTAAACGCTAGCTAAATATGACTATTAAATATATCTATCACTATGAAATGAATCTATTACTCTATTAGTCTGTCAAAGGAACTCTGCAGATGTTTTGTGAACCCTGACCTTACAGACCTTACAGTGTGTTACTGCAGTGTGCTCTTCCTAGTTGCTTACTGTCACAGCTTGTATCCCCGTGTTCAGTTACTATATAATGCGTTGTTCGTCTCTCTTCCCCACGGCTGTAGAGATTTTACGTGGCCACATCTCGGCAGTTAAAGCGTCTGGAGTCGGTCAGCAGGTCTCCTATATACTCCCATTTCTCTGAGACCGTCACTGGCTCTAGTGTCATCAGAGCCTACTGCAGACACGATGCCTTTGTACTAATGAGTGACATGAAGGTGGATGAGAACCAGAAGAGTTACTACCCTGGTATAGTGTCCAACAGGTAGGTGGTGTCTATATCTTACTGTACATTCACTATGGACTCTGGAGGACAGCGGCTGTGTTCCAATTGTCTTTGGGGCGGCAGGTTGCCTTGCCttaagagtgttgggtcagtaaccgaaagggcgctggtttgaatccccgagctgactaggtggaaaatgtgttgatgtgcccttgagcaattcacttaaccctaattgctcctgtaagtctctctggataagagcgtctgctaaatggctccAATATAAAATTCTTCATTTGCTTCCTTTCCTCGCTCCCTTTTTTGGCTACTGCCCTGAAGGGTCTTGGTAAAAGTCCCAAGGGTGCTAGGATTCTCTCTTCAAAATGACGGTACAGTATTTGTCTGTCCATTGCATTTTGAGAATTGGAACATAGCCACTGACTGGTGCTCATGTTGAAAGCATGCTCAACAAGCACACATACACGTTCCATCGCAAAGTACATAAAACATGAGTGTCCCACTTTACAATAAGTGCTCCTAATACTGTATCTAATCAATGTATTTGCATGGTAatgtatattgaacaaaaatatgaacgcaacagtttcaacaattttactgagttacagttcatagaaggaaatcagtcaattggaaTACATTCAtttggtcctaatctatggaattTACATGACTGGTAGGGGTGCAGCAATAGGTGGGCCTGGGagtgcataggcccacccactggggagccaggcccagccaatcagaattagtttttcgccactaaagggctttattacagaccaaaatattttttagtttcatcagctgtccaagtGGCTGGTCTCGGATgttcccgcaggtgaagaagccggatgtggaggtcctgggctggtgtggttacacatggtctgcggttgtgaggctggttggacacgTACTGCCAAATACTCAAAcagacattggaggtggcttatagtagagacatgaacattaaattctctggaaacagcttTGTTGGACAGTCCTGcactcagcatgccaattgcacgcatGTGtggtgttttgtgacaaaactgcacattttagtggatttttattgtcccaagcacaaggtacacctggcaaaggagaaatgctaacagggatgtaaacaatttAAAAAAGAGAAGATTTTTGGGCATATGGACAATTCtatttaatttcagctcataaatatgggaccaacactttacattagtggaggacggctcataataatatcTGGAACGGAACGAATGGATTGACACCaatcacatggaaaccatgtttgatgtatttgataccattccactgattcctctccagccattaccacgggcccgtcctccccaattaaggttccaccaacctcctgagctttacatgttgcgtttcatTTTTTTCCTTCAGTATATTTACATAGACAGGTTCAGTGTAACTACTGTGTAGAGCAGCGCTGACGCACAGTGTGGTTTCTAactgtgtcttgtgtgtgtgtaggtggttaGGGGTGCGTATAGAGTTCATCGGGAACTGCATCGTACTGTTTGCTGCTCTGTTTGCTGTGATCGGGAAAGACAAGCTCAACCCTGGACTGGTGGGACTCTCTGTGTCCTACGCTCT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1897714 lncRNA downstream 43635 6798148 ~ 6798444 (-) True G1658047
TU1897706 lncRNA downstream 53769 6787824 ~ 6788310 (-) True G1658039
TU1897698 lncRNA downstream 80842 6760962 ~ 6761237 (-) True G1658031
TU1897689 lncRNA downstream 95913 6745954 ~ 6746166 (-) True G1658022
TU1897688 lncRNA downstream 96447 6745433 ~ 6745632 (-) True G1658021
TU1897795 lncRNA upstream 43791 6937322 ~ 6955793 (-) True G1658117
TU1897811 lncRNA upstream 86225 6979756 ~ 6980181 (-) True G1658133
TU1897820 lncRNA upstream 102037 6995568 ~ 6996004 (-) True G1658142
TU1897843 lncRNA upstream 134791 7028322 ~ 7029490 (-) True G1658159
TU1897867 lncRNA upstream 154376 7047907 ~ 7117820 (-) True G1658181
XM_021575542.2 mRNA downstream 12774 6825761 ~ 6829305 (-) True LOC110498871
XM_036955655.1 mRNA downstream 259167 6571334 ~ 6582912 (-) False LOC110498864
XM_021575535.2 mRNA downstream 259168 6571334 ~ 6582911 (-) False LOC110498864
XM_036955656.1 mRNA downstream 263220 6571334 ~ 6578859 (-) False LOC110498864
XM_021575533.2 mRNA downstream 299587 6536771 ~ 6542492 (-) True LOC110498863
XM_021575545.2 mRNA upstream 65131 6958662 ~ 6998949 (-) True LOC110498873
XM_036955680.1 mRNA upstream 204836 7098367 ~ 7109975 (-) False si:dkey-94l16.4
XM_021575553.2 mRNA upstream 204836 7098367 ~ 7110366 (-) False si:dkey-94l16.4
XM_021575550.2 mRNA upstream 204836 7098367 ~ 7110369 (-) False si:dkey-94l16.4
XM_021575552.2 mRNA upstream 204836 7098367 ~ 7110373 (-) False si:dkey-94l16.4
TU1897524 other downstream 270624 6568700 ~ 6571455 (-) True LOC110498864
TU1897514 other downstream 332499 6509119 ~ 6509580 (-) True G1657869
TU1897513 other downstream 334150 6505621 ~ 6507929 (-) False G1657868
TU1897506 other downstream 341871 6499834 ~ 6500208 (-) True G1657862
TU1897398 other downstream 462572 6377412 ~ 6379507 (-) True G1657768
TU1899604 other upstream 1493437 8386968 ~ 8389254 (-) False LOC110498913
TU1899603 other upstream 1493481 8387012 ~ 8389254 (-) True LOC110498913
TU1900940 other upstream 2505586 9399117 ~ 9400947 (-) True G1661023
TU1900917 other upstream 2529252 9422783 ~ 9460115 (-) True G1661001
TU1901981 other upstream 3583432 10476963 ~ 10477185 (-) True G1662039

Expression Profile


XM_036955672.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_036955672.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036955672.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.