RNA id: TCONS_00049971


Basic Information

Item Value
RNA id TCONS_00049971
length 642
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_025314
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24050043 ~ 24071582 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGATGAGCATGAGCCAACCTACAGAGACAGTTAGTGATGCTCCCAGCGTCACCGAAGAAGTTTCTCCAGACAGCAAGCTGGCGGCCACTGCTGGAAAGAAGCAGACCAAGAAGAAGGTGGAGGATGTTgtagaagaggaagaggaggaataTGTAGTGGAAAAGGTCCTGGACAGGCGGGTGGTGAAGGGCAGAGTGGAATACTTGCTCAAATGGAAGGGCTTTTCAGAagAAGATAACACATGGGAACCAGAGGACAACCTGGACTGTCCTGATCTCATCGCAGAGTacatgacaaaacataaaataaatgatgacaagAAAGAATCCAGTGCAAAGAGGAAAGAATCTGACACAGATGGTGGTGGAGAAGATAGTCGGCCTAAGAAGAGGAAAGATGAGCAAGACAAGCCAAGGGGATTTGCACGAGGTTTAGATCCAGAACGTATCATTGGAGCCACAGATTCCAGCGGGGAGCTCATGTTTCTAATGAAATGGAAAAACTCTGACGAGGCAGATCTGGTTCCAGCAAAAGAGGCCAATGTGAAGTGTCCACAGGTGGTAATTTCCTTCTATGAAGAGCGGCTAACATGGCACTCGTACCCTTCTGAGGAAGAAGAGAAGAAAGATGACAAGAACTAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4945 Predicted to be located in nucleus. Is expressed in brain and retina. Orthologous to human CBX1 (chromobox 1).

Ensembl:

ensembl_id ENSDART00000188574

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052663 lncRNA upstream 94782 23930446 ~ 23967966 (+) False XLOC_025313
TCONS_00049968 lncRNA upstream 94782 23934892 ~ 23967966 (+) False XLOC_025313
TCONS_00052664 lncRNA upstream 97710 23934941 ~ 23965038 (+) False XLOC_025313
TCONS_00052665 lncRNA upstream 100077 23934964 ~ 23962671 (+) True XLOC_025313
TCONS_00049952 lncRNA upstream 366540 23694156 ~ 23696208 (+) True XLOC_025306
TCONS_00052666 lncRNA downstream 51154 24121201 ~ 24133485 (+) True XLOC_025317
TCONS_00052667 lncRNA downstream 64399 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00049978 lncRNA downstream 91822 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052668 lncRNA downstream 92935 24162982 ~ 24182360 (+) False XLOC_025319
TCONS_00052337 lncRNA downstream 94872 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00049965 mRNA upstream 290803 23743139 ~ 23771945 (+) False XLOC_025307
TCONS_00049967 mRNA upstream 291606 23768898 ~ 23771142 (+) True XLOC_025307
TCONS_00049966 mRNA upstream 307917 23752150 ~ 23754831 (+) True XLOC_025312
TCONS_00049962 mRNA upstream 312838 23737795 ~ 23749910 (+) False XLOC_025307
TCONS_00049964 mRNA upstream 314688 23742868 ~ 23748060 (+) False XLOC_025307
TCONS_00049972 mRNA downstream 24534 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA downstream 24596 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049976 mRNA downstream 64371 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049980 mRNA downstream 119757 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA downstream 120160 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049958 other upstream 342003 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 366735 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049946 other upstream 389293 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049938 other upstream 823290 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049913 other upstream 1493642 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049974 other downstream 25113 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other downstream 25910 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049977 other downstream 64510 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00050021 other downstream 1056409 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 2074718 26144765 ~ 26151560 (+) False XLOC_025372

Expression Profile

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