RNA id: XM_036955701.1


Basic Information

Item Value
RNA id XM_036955701.1
length 2360
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110498903
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8197192 ~ 8207003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGaaatggtagctagctagcattctaTGAAAATTTGTCTAACGCACGACTGTGATTATCTGATCGAAATAATGAATTTACTACCATCAAACGCACATGGGAACGGACTACTGTACGCGGGATTCAACCAGGATCATGGATGCTTTGCTTGCGGAATGGAGAATGGGTTTAGAGTGTACAACACAGATCCactcaaagagaaagaaaaacaagCATTGCTTGCAGTAAATCGAGGCCATTCTGCTGCACACAGGGGCACAGCATTGTGACAGCGAGAGCCAAGGTACTTCCTTCCCGCTCCTGATGTGTGTGAGATGAGatggatctgtctgtctgtggctggGTTGGTGCTCTGGTTGGATGAGGAAGGCTAAATGAGGAAGTTAATCATTCCGCCACTGAGCCCTGCACATGTGACTCCTCACATGACCTGGTCCAAAGTCATAATAGGAAATGgcttactgtactgtagggaaagGATTAGCCTATAGTATAGGCCAGGGATGGCCTAACCTGGTTCTGGAGGGTTGCtgcagggtgtgcaggcttttgttgatATGGGTCTAAATAACACCAGCACTACAGTAATTTTTATTACAGTGATGCCTCATGCATGCTGTAAAGGTTTGCTATAATATGCAGATGGAGTGAAGAGTTGTTTGCTATTTAGTAAAACTTTGAGATATTAAAACTATTTAAATTCTCCTTGTCAGGGACGGATCTCTCTAGTCACATTTTATAGATCTTATTGGAATAATGGTTTGGATAATTGCGGTGTTTTTTTAGGCGACACCCTTGATTCTCATTGGCTCAGTTTATTCGCCACCCGCCAGATTGACAGCTTAATGGCCAATGAGGTGATTATATGTGTCTTCCAGAGTTCATGGAGGGCGGGGTCGGGCATGTGGAGATGCTGTTCAGGTGTAACTACCTAGCGCTGGTTGGAGGAGGAAAAAAGCCCAAATACCCACCTAACAAAGTGATGATCTGGGATGACCTGAAGAAAAAGACGGTTATAGAAATCGAGTTCTCCACGGAGGTCAAAGCAGTGAAGCTTCGAAGGGACAGGATCGTGGTGGTCCTGGACTCTATGATCAAAGTGTTCACGTTCACCCACAACCCTCATCAGCTGCATGTGTTTGAGACCTGCTATAATCCCAAAGgtCTGTGTGTGCTCTGTCCCAACAGTAACAACTCTCTGCTGGCGTTCCCGGGGACCCACTCTGGGCACGTGCAGATCGTAGACCTTGCCAACACAGAGAAGCCTCCAGTGGATATCCCCGCCCACGAGGGGGCGCTGTGTTGCATCGCCCTCAACCTGCAGGGAACCAGGATAGCCACTGCCTCCGAGAAAGGGACCCTGATCAGAATATTTGACACCATGGCAGGCCACCTGATTCAGGAGTTGAGGCGAGGGTCACAGGCTGCTAACATCTACTGCATCAATTTCAACCAGGATGCGTCCCTCATCTGTGTGTCTAGTGACCACGGTACAGTCCACATATTCGCTGCAGAGGACCCCAAGAGGAACAAACAGTCCAGCCTAGCCTCGGCCAGTTTCCTTCCTAAGTACTTCAGCTCCAAGTGGAGCTTCTCCAAGTTCCAGGTTCCATCAAACTCGCCGTGTGTGTGTTCCTTCGGAACAGAACCCAACTCTGTCATAGccattTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAATCAGAAGGGGGAGTGTTCCCGAGACGTCTACGCACAGTTCCTGGAGATGACAGACGAGAAGATCTGACCTTTCACCCTACCACCTCCTGCAAACGGACAGACGTGTACATGGCGGATGGGTTTATTTTCTGGAGCAGGAGGACGAGGGGGATGGACAGAAGGAGGAGATGATGTTTCTGCTCACCCACTGCTGATGAACTCTACATGAAGCGTCAGAGGGAAGGTGAGAGAGACACCATCTCGGAAACAACAGAGGAATGAAAGATGGGCCGAGAGCCCTCTGACAACCTACTTAAAGACTCCCTGTACAACTAGACAACTACAGAAAGACAGGGGGACGAGAACACTCTAAAGGACGTCACCTGGGCCTCCTTGTCCTGCTAGTCCGGGGACGAACGAGGGAGACTTGCTTTTTAAAGATGTCTTCCGTGAAATGTACGATGATCGGGCGGTTATTTTTTAAAGGTGTATAGCGTTGATTCTAATAGGTAGATGCATAGAAAACAAATCTTGTCAACTAACACCGCCTAATCTAACTATAGGGAGTGCCTCTGAGCTGAATCGAGtggagtgtgtgtatatactcgcatacatacagtgcattcagaaagttcagaccccttcactttctatattttgttacgttacagccttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1899478 lncRNA downstream 42167 8154615 ~ 8155025 (-) True G1659654
TU1899447 lncRNA downstream 87346 8109527 ~ 8109846 (-) True G1659624
TU1899434 lncRNA downstream 102722 8091328 ~ 8094470 (-) True G1659612
TU1899394 lncRNA downstream 125144 8043573 ~ 8072048 (-) True G1659572
TU1899335 lncRNA downstream 212269 7984278 ~ 7984923 (-) True G1659521
TU1899509 lncRNA upstream 16117 8222941 ~ 8223164 (-) True G1659685
TU1899524 lncRNA upstream 41147 8247971 ~ 8248195 (-) True G1659698
TU1899526 lncRNA upstream 45545 8252369 ~ 8286645 (-) True G1659700
TU1899557 lncRNA upstream 77686 8284510 ~ 8374399 (-) False G1659721
TU1899554 lncRNA upstream 98383 8305207 ~ 8320531 (-) True G1659721
XM_021575585.2 mRNA downstream 112826 8019327 ~ 8084366 (-) False LOC110498897
XM_021575586.2 mRNA downstream 112826 8019327 ~ 8084366 (-) False LOC110498897
XM_021575587.2 mRNA downstream 112826 8019327 ~ 8084366 (-) False LOC110498897
XM_021575588.2 mRNA downstream 112826 8019327 ~ 8084366 (-) False LOC110498897
XM_021575589.2 mRNA downstream 112826 8019327 ~ 8084366 (-) False LOC110498897
trnar-ucg-4 mRNA upstream 16867 8223691 ~ 8223763 (-) True trnar-ucg-4
XM_021575606.2 mRNA upstream 17266 8224090 ~ 8246266 (-) True LOC110498906
XM_021575611.2 mRNA upstream 152099 8358923 ~ 8376264 (-) True LOC110498910
XM_021575617.2 mRNA upstream 180161 8386985 ~ 8389289 (-) False LOC110498913
XM_021575616.2 mRNA upstream 180161 8386985 ~ 8389308 (-) False LOC110498913
TU1897524 other downstream 1625737 6568700 ~ 6571455 (-) True LOC110498864
TU1897514 other downstream 1687612 6509119 ~ 6509580 (-) True G1657869
TU1897513 other downstream 1689263 6505621 ~ 6507929 (-) False G1657868
TU1897506 other downstream 1696984 6499834 ~ 6500208 (-) True G1657862
TU1897398 other downstream 1817685 6377412 ~ 6379507 (-) True G1657768
TU1899604 other upstream 180144 8386968 ~ 8389254 (-) False LOC110498913
TU1899603 other upstream 180188 8387012 ~ 8389254 (-) True LOC110498913
TU1900940 other upstream 1192293 9399117 ~ 9400947 (-) True G1661023
TU1900917 other upstream 1215959 9422783 ~ 9460115 (-) True G1661001
TU1901981 other upstream 2270139 10476963 ~ 10477185 (-) True G1662039

Expression Profile