RNA id: XM_021575616.2


Basic Information

Item Value
RNA id XM_021575616.2
length 1229
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110498913
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8386968 ~ 8389308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAACCGGATTTATAAATGGTTAGTTGACGTCATGGGGAAATATAACGTTTGACTCACTTCCCCAGTTATCGTTAttcgtggtgtgtgtgtctggaggaAACGGAGTCACTTTAATTACGTTCAGTTTTGGAATAATCCAGCAGTTACCAATCGTAAGATGGCTCGTACCAAGCAGACCGCCCGCAAGTCCACCGGAGGAAAGGCGCCAAGGAAGCAGCTCGCTACAAAGGCAGCCAGGAAAAGCGCGCCATCCACCGGAGGAGTAAAGAAACCCCATCGTTACAGGCCAGGGACCGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCAACAGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACAGACCTGCGTTTCCAGAGTGCTGCCATTGGAGCTCTTCAGGAGGCCAGCGAAGCATACCTGGTGGGTCTGTTCGAGGACACCAACCTGTGTGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGGAGGATAAGGGGAGAGCGAGCTTAAATGGCATTCAACTGCCTGCTCCAGACATAATCCTATTTATCTTACTTAACaatttaatgttttatttttatttccagttttttttctttttttcgtATTTTAGAATGATAAGAGATGGGTCATTCCACAAACCTCAATTCAGATCTGGCCAATGTGAGGACAGAGGAATTTAGGAATATCTGCTTCAATTGCAAATGAGGCTTGTTTTTACATTGAGTAGAGGATAGTGTATTACATGACTGTATTGACTGTACAGTCAGATGCCCTCTTCAAATGTTAACTGTCTCATTTTGGATCCTGGTGGATAGTATAGGCTCCAGATGAGGTTGGAGCTCTtgcttgtggggggggggggggggattcaagATGTCTGAATTCTTCTCAGCTGCCAGGGGAAGGAATGGTCTGGGTCCTTCATCAATTTCCACCCTTTGTCTGTCAGCATGTCTTGCACAACACCTCACTACACAGTGGTGTCGGGATTTACCTCTTGACACTGTCTAGGATGGCCAGGAGCACGACAAAGCCCCCCTGTATATTCTGAACTGctttttacatgttattttccCAACATATAAAACCTTGGCAGCTACATTTAATACTATTTATGGAAGCGTTGTCACATTGTAGTCTTTCTATTAAATGTCTTTATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1899557 lncRNA downstream 12586 8284510 ~ 8374399 (-) False G1659721
TU1899588 lncRNA downstream 52835 8333862 ~ 8334150 (-) True G1659752
TU1899554 lncRNA downstream 66454 8305207 ~ 8320531 (-) True G1659721
TU1899526 lncRNA downstream 100340 8252369 ~ 8286645 (-) True G1659700
TU1899524 lncRNA downstream 138790 8247971 ~ 8248195 (-) True G1659698
TU1899618 lncRNA upstream 1105 8390413 ~ 8390816 (-) True G1659779
TU1899616 lncRNA upstream 1719 8391027 ~ 8391331 (-) True G1659777
TU1899652 lncRNA upstream 2816 8392124 ~ 8392497 (-) True G1659812
TU1899659 lncRNA upstream 13711 8403019 ~ 8403891 (-) True G1659816
TU1899665 lncRNA upstream 29615 8418923 ~ 8422527 (-) True G1659821
XM_021575611.2 mRNA downstream 10721 8358923 ~ 8376264 (-) True LOC110498910
XM_021575606.2 mRNA downstream 140719 8224090 ~ 8246266 (-) True LOC110498906
trnar-ucg-4 mRNA downstream 163222 8223691 ~ 8223763 (-) True trnar-ucg-4
XM_021575599.2 mRNA downstream 179982 8197192 ~ 8207003 (-) False LOC110498903
XM_036955712.1 mRNA upstream 11889 8401197 ~ 8415354 (-) False LOC110498732
XM_036955714.1 mRNA upstream 11889 8401197 ~ 8415354 (-) False LOC110498732
XM_036955711.1 mRNA upstream 11889 8401197 ~ 8415355 (-) False LOC110498732
XM_036955713.1 mRNA upstream 11889 8401197 ~ 8415355 (-) True LOC110498732
XM_021575619.2 mRNA upstream 54004 8443312 ~ 8467142 (-) True trim65
TU1897524 other downstream 1815530 6568700 ~ 6571455 (-) True LOC110498864
TU1897514 other downstream 1877405 6509119 ~ 6509580 (-) True G1657869
TU1897513 other downstream 1879056 6505621 ~ 6507929 (-) False G1657868
TU1897506 other downstream 1886777 6499834 ~ 6500208 (-) True G1657862
TU1897398 other downstream 2007478 6377412 ~ 6379507 (-) True G1657768
TU1900940 other upstream 1009809 9399117 ~ 9400947 (-) True G1661023
TU1900917 other upstream 1033475 9422783 ~ 9460115 (-) True G1661001
TU1901981 other upstream 2087655 10476963 ~ 10477185 (-) True G1662039
TU1903031 other upstream 2732605 11121913 ~ 11123711 (-) False LOC110498953
TU1903036 other upstream 2732757 11122065 ~ 11158776 (-) True LOC110498953

Expression Profile