RNA id: TCONS_00049978


Basic Information

Item Value
RNA id TCONS_00049978
length 635
lncRNA type lincRNA
GC content 0.53
exon number 3
gene id XLOC_025319
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24161869 ~ 24184426 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agacagctttgcacagtttgtCTTTAGATAAAATGAAATGACTTGCTGCGGACGCTGTCAGACTCAGAAGAACATCTGTCCTGCCTGGAGATCCTGATTTCTGACCCCTGCCTGGAGGAGAGCGGCGCTGTGTGCTGTAGAGGGGAGATAATGGCCTCTGGCTCCTCAATCTCTCGCTGTAATGTGTTTCTGACGCCAGCGAGTGCCTGCGGCCCCTTGGGAGGCACAGGGACGACATCATGATGGAGTGTCAGCAGAATGAAACGAGAGAAGCCACCCAGAAAGCGATGACCCGCTGACCCCTGTGGTAATGCCAGCCTCCAGGCGAGCTGACTTCACACCAGCAGATGCACACAGCTCTTTCTGTCCTGCTCTTCAGCTGTCCAGGATCTGGAGCCATGGAGAGAGAAGAGCTCAAGGACGGGGACAGCAGAGCCGCCGCTGCAGCCCTGCGGGCCTGTTCTGGACTCCACTGTCAGCCATGATGGACAGCTGCTGCCCAGGTATATCAGGACAAGTGCTTTATAGGATAATGTAGGCGGCTGGTGTCCTGGTTTCTGATTATACATGCACAACAAACCCTCTGCTGTATGCAATTAAGTACAAGACCAACAAGATTATACAAATATATTCAT

Function

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0003157 endocardium development biological_process
GO:0003158 endothelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154673

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052667 lncRNA upstream 16619 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00052666 lncRNA upstream 28384 24121201 ~ 24133485 (+) True XLOC_025317
TCONS_00052663 lncRNA upstream 193903 23930446 ~ 23967966 (+) False XLOC_025313
TCONS_00049979 lncRNA downstream 9403 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052338 lncRNA downstream 45958 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049990 lncRNA downstream 126518 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 267367 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 470259 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00049976 mRNA upstream 16619 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049972 mRNA upstream 50457 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA upstream 50457 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049970 mRNA upstream 90287 24060454 ~ 24071582 (+) False XLOC_025314
TCONS_00049971 mRNA upstream 91822 24062748 ~ 24070047 (+) True XLOC_025314
TCONS_00049980 mRNA downstream 18574 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA downstream 18977 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049982 mRNA downstream 26704 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049983 mRNA downstream 36013 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA downstream 36152 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049977 other upstream 23961 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 60787 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 65833 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 441124 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 465856 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 955226 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1973535 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 2023114 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2139264 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2900543 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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