RNA id: trnaa-agc-8


Basic Information

Item Value
RNA id trnaa-agc-8
length 73
RNA type mRNA
GC content 0.59
exon number 1
gene id trnaa-agc-8
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9329070 ~ 9329142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcatcctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1900806 lncRNA downstream 132183 9185730 ~ 9196887 (-) True G1660898
TU1900328 lncRNA downstream 143959 9184824 ~ 9185111 (-) True G1660452
TU1900327 lncRNA downstream 144358 9183905 ~ 9184712 (-) True G1660451
TU1900325 lncRNA downstream 145938 9182850 ~ 9183132 (-) True G1660449
TU1900309 lncRNA downstream 158108 9170652 ~ 9170962 (-) True G1660433
TU1900883 lncRNA upstream 2618 9331760 ~ 9334929 (-) True G1660967
TU1900897 lncRNA upstream 28910 9358052 ~ 9359601 (-) True G1660981
TU1900933 lncRNA upstream 62743 9391885 ~ 9395929 (-) False G1661017
TU1900934 lncRNA upstream 62743 9391885 ~ 9394359 (-) True G1661017
TU1900915 lncRNA upstream 102639 9431781 ~ 9439407 (-) True G1660999
XM_036955719.1 mRNA downstream 18220 9281357 ~ 9310850 (-) False pkd1b
XM_036955720.1 mRNA downstream 18220 9281357 ~ 9310850 (-) True pkd1b
XM_021575651.2 mRNA downstream 57557 9193289 ~ 9271513 (-) True spata20
XM_036956460.1 mRNA downstream 289749 8840694 ~ 9039321 (-) False LOC110498733
XM_021575645.2 mRNA downstream 534479 8719208 ~ 8794591 (-) False LOC110498925
XM_036955727.1 mRNA upstream 177232 9506374 ~ 9513696 (-) False nme2a
XM_021575667.2 mRNA upstream 177232 9506374 ~ 9513697 (-) False nme2a
XM_021575666.2 mRNA upstream 177232 9506374 ~ 9513698 (-) True nme2a
XM_021575670.2 mRNA upstream 219796 9548938 ~ 9552737 (-) True LOC110498935
XM_036955728.1 mRNA upstream 348758 9677900 ~ 9986738 (-) False LOC110498737
TU1899604 other downstream 939816 8386968 ~ 8389254 (-) False LOC110498913
TU1899603 other downstream 939816 8387012 ~ 8389254 (-) True LOC110498913
TU1897524 other downstream 2757615 6568700 ~ 6571455 (-) True LOC110498864
TU1897514 other downstream 2819490 6509119 ~ 6509580 (-) True G1657869
TU1897513 other downstream 2821141 6505621 ~ 6507929 (-) False G1657868
TU1900940 other upstream 69975 9399117 ~ 9400947 (-) True G1661023
TU1900917 other upstream 93641 9422783 ~ 9460115 (-) True G1661001
TU1901981 other upstream 1147821 10476963 ~ 10477185 (-) True G1662039
TU1903031 other upstream 1792771 11121913 ~ 11123711 (-) False LOC110498953
TU1903036 other upstream 1792923 11122065 ~ 11158776 (-) True LOC110498953