RNA id: TCONS_00052337


Basic Information

Item Value
RNA id TCONS_00052337
length 363
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id XLOC_025319
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24161869 ~ 24184426 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGAGAGCGGCGCTGTGTGCTGTAGAGGGGAGATAATGGCCTCTGGCTCCTCAATCTCTCGCTGTAATGTGTTTCTGACGCCAGCGAGTGCCTGCGGCCCCTTGGGAGGCACAGGGACGACATCATGATGGAGTGTCAGCAGAATGAAACGAGAGAAGCCACCCAGAAAGCGATGACCCGCTGACCCCTGTGGTAATGCCAGCCTCCAGGCGAGCTGACTTCACACCAGCAGATGCACACAGCTCTTTCTGTCCTGCTCTTCAGCTGTCCAGGATCTGGAGCCATGGAGAGAGAAGAGCTCAAGGACGGGGACAGCAGAGCCGCCGCTGCAGCCCTGCGGGCCTGTTCTGGACTCCACTGT

Function

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0003157 endocardium development biological_process
GO:0003158 endothelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052667 lncRNA upstream 19669 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00052666 lncRNA upstream 31434 24121201 ~ 24133485 (+) True XLOC_025317
TCONS_00049968 lncRNA upstream 196953 23934892 ~ 23967966 (+) False XLOC_025313
TCONS_00049979 lncRNA downstream 9562 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052338 lncRNA downstream 46117 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049990 lncRNA downstream 126677 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 267526 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 470418 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00049976 mRNA upstream 19669 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049972 mRNA upstream 53507 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA upstream 53507 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049970 mRNA upstream 93337 24060454 ~ 24071582 (+) False XLOC_025314
TCONS_00049980 mRNA downstream 18733 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA downstream 19136 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049982 mRNA downstream 26863 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049983 mRNA downstream 36172 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA downstream 36311 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049977 other upstream 27011 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 63837 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 68883 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 444174 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 468906 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 955385 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1973694 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 2023273 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2139423 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2900702 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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