RNA id: TCONS_00049979


Basic Information

Item Value
RNA id TCONS_00049979
length 555
lncRNA type lincRNA
GC content 0.48
exon number 4
gene id XLOC_025319
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24161869 ~ 24184426 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGAGATATTTCGCCCAATAGTGAAAAATGGTTGTTAATTTGTTTGCTGAAGACCAACCAAGAGGAGGCAGCGGTGGATAAAAAAAGTGATGAGAGCAGAGATGTTTTGATTGATGTGCTCCATCATTCAACGTCCGTTCTTCTCCACAGCGTCAAGaaccagtgtttgtgtgtttgtgcacatcaAGTAAAGATAAGGCAGTAATGATGACTGACGGGCCCTACTGCCACCTGGCGGACAAATACAAGACTGCAGAGATTGAACTGCAAGAGATGGAGCTGTAATTTGAGAAACTGGCCACCAGCTGGCGCGCACACACAACATAGGCAACGCTTTATCTGGCACAAGACAGTGGACAGGCAGGTCTTGGCTGCAATGAGTAAACTACCAACGCCAGAGCCCAGCTGGTGCTGAACAGACCCTCAGCCACACGCCTTTCGAGTGGGCCATGAAATGTGGCTTGTTCTTATTTAATCCCATGTGTCTGAAGTTACTGAACATAAACTGTCCTACTGCCAGTGCACCCCATGAACCAGGCAGACCTCAGTCCGAG

Function

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0003157 endocardium development biological_process
GO:0003158 endothelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155846

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049978 lncRNA upstream 9403 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052337 lncRNA upstream 9562 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00052667 lncRNA upstream 35383 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00052666 lncRNA upstream 47148 24121201 ~ 24133485 (+) True XLOC_025317
TCONS_00049968 lncRNA upstream 212667 23934892 ~ 23967966 (+) False XLOC_025313
TCONS_00052338 lncRNA downstream 32762 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049990 lncRNA downstream 113322 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 254171 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 457063 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 746154 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00049976 mRNA upstream 35383 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049972 mRNA upstream 69221 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA upstream 69221 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049970 mRNA upstream 109051 24060454 ~ 24071582 (+) False XLOC_025314
TCONS_00049980 mRNA downstream 5378 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA downstream 5781 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049982 mRNA downstream 13508 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049983 mRNA downstream 22817 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA downstream 22956 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049977 other upstream 42725 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 79551 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 84597 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 459888 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 484620 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 942030 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1960339 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 2009918 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2126068 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2887347 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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