RNA id: TCONS_00049980


Basic Information

Item Value
RNA id TCONS_00049980
length 1598
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_025320
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24189804 ~ 24197270 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aattattttgtttacgAGGACCAATTTCTAAAATATTGGAtgaacatctgaaaaaaaaaatcctccatCTTGGATGACCCGATGCTATTGTCCTAAAGCTGTTTATTCAGGCAGCAGAGGGAGGAGTGTGTGTGGCTGCATGAAGGGAGGAGTCGCGCACCTGTGAATCTACACCTGCTTGCCAGAGAGAAGGACAGGACAGCCAAACCGGGGAAGAGGCAGGAGACCAGAGATACACCGAAACTAATTCAGATCCAAAGAATAAAGAGGGTCCTACAGGCCGATGACCTCACCTGCTGGCATCAACCAGATTGAGAACTGAACTGAAGGATAGTGAACCCTCAAAGGCAGATAACAAACAACTGTCACAACGGACGTACCTTTACCTGTACAGAAACTGCCATTAACACAATGGCGACCGCAGAACCTGCCCCAGCCTGGTGGAAACTGACCTTCCTGCGAAAAAAGAAATCGGAGCCAAAAGTGCTGTATGAAATCGCAGGAGACCACAGCAGCAATGGCGGAGAGGCATCTGGGACCACTGATGCTGCAACAGACAGCCAGTTTAATGCCCGCTTGGAGCGCATTGTGGACAAAACAGCAACAAAGGGGCGACATGTGAAAGTCTCGCATTCAGGTCGCTTTAAAGAGAAGAAACGAATCCGCTCTACTCTAGCAGAAAACCCTGAGCTTTTCCCTGAGGCCGAAACGACAGCTAATGAGAACAATAAAAGTGGAAAATAGAGTCGCTGTGTAAACACACTAGCATGTGTGTGTAAAGCAGCTCAAGAGGGCCAGCACTCTTCCAATTGACGTCCTCTGCCGTTTACAATCGCCTGAAGCTCTGAGCCTGAAGCAAGAGCAGGATCGCTGAATTAATGACTGATCTATACTGATGTTTGGTAACAAAGACATGCACAAACCCAAAGATCAGGTTTCTTCACAGATACACACAGCACCACTGCATTGTGGTCGACCCTTGAAAGGCTGACATTTAGCAAATGTTTAGCAAAGAGAAGGAATCAAACCAATCATATAGCAGCACAAGATGTCAGTAATGATAGTGGTTATTCTTTgattatttcttatatattatatGGTGAATCAGTTGCAGCTAGAGCACTTGTGATTcaacatattaaaaaattattacaagCATTGTGCTACAATGTTAAAAGGTTTTTTAGTAATGTCTATTCCAAATTTatactgtaattatattaaacatAGATTGCTGGTATctttgaaaaactaaataaaaacaaagtgtcATCATTGCTTGAATAGACCAAAATATATATTCTGAATAATAACTCTCTTGCTATAATACACAATTTTAGCCTCTTGTGTTGCTGTGTCGggtttcatttagatttttaatcttGGTTGCTATTTATTGTACAGagattttataaaatgtaatctgAAAATGGAGGGGGTTTATAAttgctttttgtttaataaaatggtCAAACATTTGCACAATGTCTAATTTAATAGTTTGCTTAGCTGTGATTAAACACTTAGTTTTGTACAAATGTATGCATTGTTTCAAATATACCTCTGTAGAAAATAAATTATTGCTTTCAAGATGTGGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-218 Is expressed in lateral line system; otic placode; otic vesicle; and pronephric duct. Orthologous to human PRR15L (proline rich 15 like).

Ensembl:

ensembl_id ENSDART00000134723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049979 lncRNA upstream 5378 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052668 lncRNA upstream 7444 24162982 ~ 24182360 (+) False XLOC_025319
TCONS_00049978 lncRNA upstream 18574 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052337 lncRNA upstream 18733 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00052667 lncRNA upstream 44554 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00052338 lncRNA downstream 19918 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049990 lncRNA downstream 100478 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 241327 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 444219 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 733310 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00049976 mRNA upstream 44554 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049972 mRNA upstream 78392 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA upstream 78392 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049970 mRNA upstream 118222 24060454 ~ 24071582 (+) False XLOC_025314
TCONS_00049971 mRNA upstream 119757 24062748 ~ 24070047 (+) True XLOC_025314
TCONS_00049982 mRNA downstream 664 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049983 mRNA downstream 9973 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA downstream 10112 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049985 mRNA downstream 23084 24220354 ~ 24226028 (+) True XLOC_025324
TCONS_00049987 mRNA downstream 78327 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049977 other upstream 51896 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 88722 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 93768 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 469059 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 493791 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 929186 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1947495 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 1997074 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2113224 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2874503 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU194733 True 206 TUCP 0.39 1 CI01000034 1318049 ~ 1318254 (-)