RNA id: TCONS_00049981


Basic Information

Item Value
RNA id TCONS_00049981
length 1395
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_025320
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24189804 ~ 24197270 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAAACCGGGGAAGAGGCAGGAGACCAGAGATACACCGAAACTAATTCAGATCCAAAGAATAAAGAGGGTCCTACAGGCCGATGACCTCACCTGCTGGCATCAACCAGATTGAGAACTGAACTGAAGGATAGTGAACCCTCAAAGGCAGATAACAAACAACTGTCACAACGGACGTACCTTTACCTGTACAGAAACTGCCATTAACACAATGGCGACCGCAGAACCTGCCCCAGCCTGGTGGAAACTGACCTTCCTGCGAAAAAAGAAATCGGAGCCAAAAGTGCTGTATGAAATCGCAGGAGACCACAGCAGCAATGGCGGAGAGGCATCTGGGACCACTGATGCTGCAACAGACAGCCAGTTTAATGCCCGCTTGGAGCGCATTGTGGACAAAACAGCAACAAAGGGGCGACATGTGAAAGTCTCGCATTCAGGTCGCTTTAAAGAGAAGAAACGAATCCGCTCTACTCTAGCAGAAAACCCTGAGCTTTTCCCTGAGGCCGAAACGACAGCTAATGAGAACAATAAAAGTGGAAAATAGAGTCGCTGTGTAAACACACTAGCATGTGTGTGTAAAGCAGCTCAAGAGGGCCAGCACTCTTCCAATTGACGTCCTCTGCCGTTTACAATCGCCTGAAGCTCTGAGCCTGAAGCAAGAGCAGGATCGCTGAATTAATGACTGATCTATACTGATGTTTGGTAACAAAGACATGCACAAACCCAAAGATCAGGTTTCTTCACAGATACACACAGCACCACTGCATTGTGGTCGACCCTTGAAAGGCTGACATTTAGCAAATGTTTAGCAAAGAGAAGGAATCAAACCAATCATATAGCAGCACAAGATGTCAGTAATGATAGTGGTTATTCTTTgattatttcttatatattatatGGTGAATCAGTTGCAGCTAGAGCACTTGTGATTcaacatattaaaaaattattacaagCATTGTGCTACAATGTTAAAAGGTTTTTTAGTAATGTCTATTCCAAATTTatactgtaattatattaaacatAGATTGCTGGTATctttgaaaaactaaataaaaacaaagtgtcATCATTGCTTGAATAGACCAAAATATATATTCTGAATAATAACTCTCTTGCTATAATACACAATTTTAGCCTCTTGTGTTGCTGTGTCGggtttcatttagatttttaatcttGGTTGCTATTTATTGTACAGagattttataaaatgtaatctgAAAATGGAGGGGGTTTATAAttgctttttgtttaataaaatggtCAAACATTTGCACAATGTCTAATTTAATAGTTTGCTTAGCTGTGATTAAACACTTAGTTTTGTACAAATGTATGCATTGTTTCAAATATACCTCTGTAGAAAATAAATTATTGCTTTCAAGATGTG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-218 Is expressed in lateral line system; otic placode; otic vesicle; and pronephric duct. Orthologous to human PRR15L (proline rich 15 like).

Ensembl:

ensembl_id ENSDART00000034762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049979 lncRNA upstream 5781 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052668 lncRNA upstream 7847 24162982 ~ 24182360 (+) False XLOC_025319
TCONS_00049978 lncRNA upstream 18977 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052337 lncRNA upstream 19136 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00052667 lncRNA upstream 44957 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00052338 lncRNA downstream 19920 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049990 lncRNA downstream 100480 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 241329 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 444221 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 733312 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00049976 mRNA upstream 44957 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049972 mRNA upstream 78795 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA upstream 78795 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049970 mRNA upstream 118625 24060454 ~ 24071582 (+) False XLOC_025314
TCONS_00049982 mRNA downstream 666 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049983 mRNA downstream 9975 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA downstream 10114 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049985 mRNA downstream 23086 24220354 ~ 24226028 (+) True XLOC_025324
TCONS_00049987 mRNA downstream 78329 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049977 other upstream 52299 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 89125 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 94171 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 469462 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 494194 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 929188 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1947497 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 1997076 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2113226 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2874505 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU33550 True 206 lncRNA 0.39 1 NC_048565.1 28846254 ~ 28846459 (+)
tiger barb (Puntius tetrazona) TU33550 False 1380 TUCP 0.42 2 NC_056701.1 23158249 ~ 23163716 (+)