RNA id: TCONS_00049982


Basic Information

Item Value
RNA id TCONS_00049982
length 1981
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_025321
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24197934 ~ 24200819 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGCAGATCCGTTCTCTTGCAAAGCTGATTGTTGTTGAAAGCCGAGCGATTCTGCTCTCCGCCGAAATGGCCGTGTGAACTGCAGCCTGTAGACAGCGCGCAAACAACTCAGTGCATCAACATAGTGCACTGGTTCAGTACATTTATATCAAAATGGCgtCCTTTGTGGCAACTCTGATCTTTGCTGTACCCGACAGCACGAAATTATTTGAATTCTCAGTAGAAGATTCTCTGATTCCACTTGAAATAGACAGCCATGTCTTTGATGAGCTCACGGTTTGGCCTGGACGATATGGAGGTCCTTCTCTGGGACCCATCATCACCGATGGCTGACCCTCTGCGGTCAATTCTAGATAAAGATGAAGAGGTTCTTCCTCTTGGAGGTGCTGAATCACCCCTCTCATCTTTCTCTTCCTCTTCACTTCCCTCTCTTTCCCCACCTTGTACTCCTCCCTCCCCTCAGAGGGGGGAGAAGGCTGGGCTTGATCCGGTGTCTCTGCCCTGGTTACCCTCAGATGAGCTGTGCCTAGATAATCGTGGCACAGACAGTGGTGAAGatcaTTCGTTTAGTGGAATGGATTGGATGACAGAACGAATTGATCTGAGTGAGTTTGATCTGGAGTCTTTGATAGACTCTTATGATTCTGAGGATCCACCCAGTTCTCCTGAGGAGCTCATTGCTTCTCTGGAGTCACAGATTGACCTGGAGTCCCTGCCTGTAGCTTCTGACAATACTTCACCCTCTCCATCAGCCTCTGTCCCTGAAATTGATCAACTCTCCAACCTTTCATTCACTTTGAATACTCCAGTTACTACACATCTCATTCCCCCATCCCCTTGTGAAATCTTAGATTCCTCCTCGGTGGTCCCTGAGCCCCAGGCTGAGTTTGAGATCAAGTCTGAACCAGCCTCTCCAGTCCCTTCACCTTCAGTCCTTCCCCCTGAGTCCCCTACTGACACTCTTGAGCTTGGTTGCGAGGTGGACATAGCAGAAGTTCAGAGTCCATCCCCTGTAGAGTTGCGGGTTCCTAAATTTGTCCTCTCTTTGTCCCCGACCCGCATTGTTTTTGTACTTGCTCCCAAAGAGGAGGTTAATGCAATGGCTACCCATTCAGGTGAGGTGGTTGTGGAAAGTTCCCCAAGTCCAACCTTCTCTGAACCCAAAACCCCATCCTGTCCTCCGTCCCGCTCTTCTAGAGCAAAGCCCTACCTTTCCCACGATTTTAAGACCACCAAAAATCAGCAGTCAGAGTCGCCTACCCTTACAGGACGAGTGAAGTCAGCCAGTGGCTCAAAGGTTGTGGTTGAGAAGAAAAAGCTGAAGAAAATGGAACAGAACAAGACTGCGGCAACTCGCTACAGACAGAAAAAGCGTGCAGAGCAAGAGACGCTCCTGTCAGAATGTGCAGTGCTCGAGGAGAGAAATCAAGAGCTGGCAGAAAAAGCTGAGTCTCTTACAAAGGAGATCCAGTACCTGAAAGAGCTAATGGAAGAAGTCAAGAGGGCAAGAGAGAACAGAAGTTCGAGAACATAAAAGGACTCAGAAGCTGAGCAAAATTGACGGTTTAGCATAGCCTGAAGTGCAGAATGCTAGTTATGAATGTTAGTCCTAAAAGAAAGTATTATATGAagggttgaaaaaaaaactgttgatttCTTCCCCGGTTTCTAaatagaaaagctttttttttagcaTGTCAGCTATCAACAGagctttatattttgtatttttttagtcGTGTGTATCTTATCCTATGCACTGTATTCTAATATAATGCattgtgtattaaaaatgtttagtcCTAAAATGATGCTGTAGAAATGCTTTGTATTTAACCTTTCCCAACGATTTAATAATAGAAATTGTTTGGTGTACACATACTGAATTATCTATTTAGGAATTTTGTTTTTGTATGGACCTCTCACTGCATATCACCCAGCTTGAACCTTATATGTATattaaacctttctaaaaataa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036091 positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:1990440 positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-23 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of ATF1-ATF4 transcription factor complex and ATF4-CREB1 transcription factor complex. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in prostate carcinoma. Orthologous to human ATF4 (activating transcription factor 4).

Ensembl:

ensembl_id ENSDART00000055609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049979 lncRNA upstream 13508 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052668 lncRNA upstream 15574 24162982 ~ 24182360 (+) False XLOC_025319
TCONS_00049978 lncRNA upstream 26704 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052337 lncRNA upstream 26863 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00052667 lncRNA upstream 52684 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00052338 lncRNA downstream 16369 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049990 lncRNA downstream 96929 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 237778 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 440670 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 729761 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00049980 mRNA upstream 664 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA upstream 666 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049976 mRNA upstream 52684 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049972 mRNA upstream 86522 24094581 ~ 24111412 (+) False XLOC_025315
TCONS_00049973 mRNA upstream 86522 24094643 ~ 24111412 (+) False XLOC_025315
TCONS_00049983 mRNA downstream 6424 24207243 ~ 24218622 (+) False XLOC_025322
TCONS_00049984 mRNA downstream 6563 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049985 mRNA downstream 19535 24220354 ~ 24226028 (+) True XLOC_025324
TCONS_00049987 mRNA downstream 74778 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049986 mRNA downstream 74778 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049977 other upstream 60026 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 96852 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 101898 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 477189 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 501921 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 925637 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1943946 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 1993525 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2109675 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2870954 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU192378 True 2016 TUCP 0.45 4 CI01000034 1250219 ~ 1310878 (+)
mexican tetra (Astyanax mexicanus) TU192378 True 1076 lncRNA 0.40 1 NC_035912.1 16805097 ~ 16806172 (+)