RNA id: TCONS_00052338


Basic Information

Item Value
RNA id TCONS_00052338
length 324
lncRNA type intronic
GC content 0.39
exon number 1
gene id XLOC_025323
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24217188 ~ 24217511 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaatttaaaaatcaacgtCACTTCTACAAGTTGTGATATTGCAAGTGACCAGTAATCAATGCTGGTTTGTCATAATTATTTGAGAGTGTGCCTATCTTTGTCACTTGACTTAATTATTTATGAGATCAGATATTTTAGACATCTTAATGACAGAATTCACAATGGCATCCACAGATTAAAGTAATAAGTTACCTCAAAGTTTAAATTTGctggcagcacggtggtgcagtgggtatcactgttgcctcacagccccggcttggtcagttggcatttctgtgcggagtttgcatgttttccataTGTTCaggttggtttcctctg

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0003203 endocardial cushion morphogenesis biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0061053 somite development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049979 lncRNA upstream 32762 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052668 lncRNA upstream 34828 24162982 ~ 24182360 (+) False XLOC_025319
TCONS_00049978 lncRNA upstream 45958 24161869 ~ 24171230 (+) False XLOC_025319
TCONS_00052337 lncRNA upstream 46117 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00052667 lncRNA upstream 71938 24134446 ~ 24145250 (+) False XLOC_025318
TCONS_00049990 lncRNA downstream 80237 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00049992 lncRNA downstream 221086 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00050010 lncRNA downstream 423978 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 713069 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00052670 lncRNA downstream 713131 24930642 ~ 24936255 (+) True XLOC_025342
TCONS_00049984 mRNA upstream 4916 24207382 ~ 24212272 (+) True XLOC_025322
TCONS_00049982 mRNA upstream 16369 24197934 ~ 24200819 (+) True XLOC_025321
TCONS_00049980 mRNA upstream 19918 24189804 ~ 24197270 (+) False XLOC_025320
TCONS_00049981 mRNA upstream 19920 24190207 ~ 24197268 (+) True XLOC_025320
TCONS_00049976 mRNA upstream 71938 24134418 ~ 24145250 (+) False XLOC_025318
TCONS_00049985 mRNA downstream 2843 24220354 ~ 24226028 (+) True XLOC_025324
TCONS_00049987 mRNA downstream 58086 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049986 mRNA downstream 58086 24275597 ~ 24297419 (+) False XLOC_025325
TCONS_00049988 mRNA downstream 58255 24275766 ~ 24296514 (+) True XLOC_025325
TCONS_00049989 mRNA downstream 79971 24297482 ~ 24434452 (+) False XLOC_025326
TCONS_00049977 other upstream 79280 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 116106 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 121152 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 496443 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 521175 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 908945 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1927254 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 1976833 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 2092983 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2854262 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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