RNA id: XR_002471696.2



Basic Information


Item Value
RNA id XR_002471696.2
length 1008
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110511226
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 11263195 ~ 11272173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGCCTGGAAGTCAGTGGTGGGAACAACAGGGATCGGCCCTCCCTGTTTTCCAAACTTCCTCTCCAAACTCTCCTGAACGGACACTGAGAGACagcgagggatagagagggaaataGTTAGATGGCAATGTAGCAATGTAACCTGATCATTGGCAACCATCGTATTTTCAAGTATATCCAATCGATCAACATTCATCCCTGAAGTTTCATCTGGGTTCACTCACACATTTCAGATTAGTATCGTTTTCATTCAGTCAAAACCTGAACATCAGAAAGGCTCTGGCACGTCACCTTAATGTAACCTACGTTATATACGGGAGTGGCCAGTGGAAATATCACCAGTTACACTTCTTTCACGGTCTTCTTTTCAGTTGTCCTTACAACTCTGAAAACACGGAGAACATTTCCAAGAGGGGACACAGTACTGTATCTCCTGCTACACAGAGGTTGTTAAAGGAAGAGGAAAAGTCTTCAGAACTGAACGAACACAGATcctctacagacagagagacaagatcAGAAAGCGGACACACAGCTCCAGAGTGGTAGTAAACAAACAGGTAAAACAACAGAACATATTGCCACCCCTCGTCCCCTACCCTGAGGGGATGACAGAtgaaaaggaaaataaaatatattaaaaaaacattttgcagGGAAAGCCAGAGACTTTATATCGTGATGAAATAAAAAATGCTCCATGCGACCTCATTTTCTACACAACAAATGGTTCTACATGGGAAGAGGAAATACTGAAACACTATCCTGAGGGAAAACAGTGGAGAAAAATTCAAGATGGCAAACAACTGAAAACGAAGGCAGGCACTATAAATGTGTATTATACTACTGGGATAATCATGGTGCAGGATAATAGTGAGACGTTAAAGATATTCCCAAATGATTTCCCAgccttgagagagagagtgagacagagcgtcGAGACGACAGAGGATGTCGAGAAGAAAATGGCAGAGCTAGGCATTGAggaaagaggagagcagaggaaaa

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU1903055 lncRNA downstream 1154 11264400 ~ 11269866 (-) True G1662995
TU1903188 lncRNA downstream 15460 11238526 ~ 11255560 (-) True G1663122
TU1903053 lncRNA downstream 68904 11199565 ~ 11202116 (-) True G1662993
TU1903127 lncRNA downstream 203888 11066933 ~ 11067132 (-) True G1663066
TU1903072 lncRNA downstream 243368 10944093 ~ 11027652 (-) True G1663012
TU1903194 lncRNA upstream 6573 11278746 ~ 11279092 (-) True G1663128
TU1903244 lncRNA upstream 73152 11345325 ~ 11346062 (-) True G1663159
TU1903311 lncRNA upstream 175674 11447847 ~ 11448067 (-) True G1663221
TU1903358 lncRNA upstream 264728 11536901 ~ 11539243 (-) True G1663261
TU1903363 lncRNA upstream 271471 11543644 ~ 11544011 (-) True G1663265
XR_005037927.1 mRNA downstream 7879 11261149 ~ 11263141 (-) True LOC110498954
XR_005037925.1 mRNA downstream 24867 11245595 ~ 11246153 (-) True LOC118942034
XR_002469898.2 mRNA downstream 65531 11203917 ~ 11205489 (-) True LOC110498956
XR_002469900.2 mRNA downstream 96477 11172527 ~ 11174543 (-) True LOC110498958
XM_021575691.2 mRNA downstream 100554 11152531 ~ 11170466 (-) True LOC110498951
XM_036955757.1 mRNA upstream 28615 11300788 ~ 11334422 (-) False LOC110498959
XM_036955758.1 mRNA upstream 28615 11300788 ~ 11334588 (-) False LOC110498959
XM_036955759.1 mRNA upstream 31534 11303707 ~ 11334588 (-) False LOC110498959
XM_036955760.1 mRNA upstream 33671 11305844 ~ 11334588 (-) True LOC110498959
XM_021575700.2 mRNA upstream 63944 11336117 ~ 11343196 (-) False LOC110498960
TU1903036 other downstream 112244 11122065 ~ 11158776 (-) True LOC110498953
TU1903031 other downstream 147309 11121913 ~ 11123711 (-) False LOC110498953
TU1901981 other downstream 793835 10476963 ~ 10477185 (-) True G1662039
TU1900917 other downstream 1810905 9422783 ~ 9460115 (-) True G1661001
TU1900940 other downstream 1870073 9399117 ~ 9400947 (-) True G1661023
TU1903362 other upstream 270443 11542616 ~ 11543091 (-) True G1663264
TU1904421 other upstream 977977 12250150 ~ 12251106 (-) False G1664239
TU1905723 other upstream 2129108 13401281 ~ 13407377 (-) True G1665402
TU1907060 other upstream 2950026 14222199 ~ 14223019 (-) True G1666656
TU1907198 other upstream 3152800 14424973 ~ 14425314 (-) True G1666788

Expression Profile


XR_002471696.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XR_002471696.2 Expression in each Bioproject

Bar chart with 20 bars.
XR_002471696.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.