RNA id: TCONS_00050000


Basic Information

Item Value
RNA id TCONS_00050000
length 1928
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_025332
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24556640 ~ 24568002 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCACTATGTGAagtatacaaacatatatatatgtaatttggAGGCAAAGACAGTTCTCTACTAGCTGAATTGAATCAAACTTTACGTCCTACTTCATTTTGAAACCGGTCATATTCACTTTCGATTCATCACTTCCGCGAACTGTCGCAGTATGAGCGAGATCTTCTCAATTGAAGCGGGAGATTTGGAAACGATAATAACTGTCTATTCGGTTCTTGTCAAGCCTAAAATATACAAAATCCTCCATTTTGCTTGGTCATTGACAGTGAACTGCCAAATTGAGTTGCTAACAGATGAGCAGTTGCTGTCTTTCTTCAACCAGAGGAAGAAGGATATTTCGTGCATTGAACAACCAAACATATTCCTGACACAACTGAGAGACCACAACCTGTTGCCGGAGACGCTTTTCCAGGCAGAAGGTGAATGCGTTGCACACTCGAGAGCAGAAGCAGAAAGGAGTCTGAGGTTTTGGACTGGCTGGGGAAAGAGAGATCTCAGGACATTCGTCGTTTCTGGCACTGTGTGCATTCTACGCCTGCTCATGGACATCCTGTCAGATGCTGGACCTCTAGATGCTGAGATGCTGACAAAAGAGAGTAAAGGAGCAGTGAACAAAGGGAAGGAAAAGAAAGACACCAGAAAGAAAAGTAAAGATGGCGTATATAGTGAGGATAGTGATGATCCGGGTACTTCTTCTGCTTCCAACGTGACTCCGAAAAAAAAAGCCAAGAAATCTTCATTCTCATCTCCTGTAAAGACAGACAACAATCAGGAGATTTGGATGTTTCCTAAATATAAGACTGAGCTGCCTGTAAAATGTGGAAACACAGAAGGCACTCTCCATCGGGATAAACTGGCCAATGGGGAGAAGTGTTTATTTGCTCAGGGACGCTGGTTCTCCCCAGGTGAATTTGAGAAGTTTGCAGGGAAGGAAAGAAGCAAAAACTGGAAAGTCAGCATCCGATGCGAAGGCACACCACTTAAAAAACTCATTGAGGCGAATCTTCTTCAGTGTAAACCGATGCAGAGAAAGCAGGGGACCTCTGTCCGAAAAAGCAAGAAAGTACAGATTGTGATCAGTTCATCTGAGGACTCCAGTCCAGaCTCAAGACCGTACTTTTCAGGAGGAGGATCACAGTTCAGAAGTAGAgttgatgatgatgaggaggaaGATGAGATGGTAGATCTGACTGTTTTCCAGGCTCATTCTTTACGAGTCACCTGTGTCTCACTCACTGGGACTCTGTACAAAAAACGGTTTGCCACAGGGAAGCGTGGAAAGAGTATACGAACTGAGGAACGCTGGTTTACTCCAGAGGAATTTGTAAAGGAGGAACCGACTCTCTCTGATGGATTCTGGAAAAAAGACATACGGTGTCATGGAAAAACTCTCAACTTTTTATGCGAGAAAAAGATCCTGCAGATTCATTCTGTTCTGTGTGAATGTGGGAAATGCAGCACTGATCCAAAAGACCTGGCAGACCAGAACAACGATGATGTGTGTTTTGCGTGTCACTCTGAGGGAGATCTGGTGTGTTGCGATGAATGTCCACGAGCTTTTCATGAATACTGTCACCTACCACCTGTACCCAAAGATGCATCTGGGGAATGgatttgcaccttttgcatgaTAAGAAAAAAGCAACAATTACAGAGCTCCAGCAACACGACTGAACAAGAAGTGTAACCTGAAGAGACATGCTACTTTATTGTTCatagattttaattattttaatatgatatTTTTGATATGTTTATGTGTATATTATTTGATTTTGTTGAACAAAACTAGTTCAAACCATGTTTGAGGACCATAACAGCATATTTtcaagatttgttttcttttcattagtTCATATTGTGCTTCATGATGCTTTGTTGTGTGCTGCATtaagcaaataaacaataaatggaTTGTGATTCATC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159405

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049992 lncRNA upstream 104627 24438597 ~ 24452013 (+) True XLOC_025327
TCONS_00049990 lncRNA upstream 227736 24297748 ~ 24328904 (+) False XLOC_025326
TCONS_00052338 lncRNA upstream 339129 24217188 ~ 24217511 (+) True XLOC_025323
TCONS_00049979 lncRNA upstream 372214 24180633 ~ 24184426 (+) True XLOC_025319
TCONS_00052337 lncRNA upstream 385569 24164919 ~ 24171071 (+) False XLOC_025319
TCONS_00050010 lncRNA downstream 73487 24641489 ~ 24644485 (+) False XLOC_025338
TCONS_00052669 lncRNA downstream 362578 24930580 ~ 24932887 (+) False XLOC_025342
TCONS_00052670 lncRNA downstream 362640 24930642 ~ 24936255 (+) True XLOC_025342
TCONS_00050018 lncRNA downstream 487974 25055976 ~ 25060120 (+) True XLOC_025344
TCONS_00050024 lncRNA downstream 623364 25191366 ~ 25196816 (+) False XLOC_025349
TCONS_00049999 mRNA upstream 1381 24537023 ~ 24555259 (+) True XLOC_025331
TCONS_00049998 mRNA upstream 38144 24511959 ~ 24518496 (+) True XLOC_025330
TCONS_00049997 mRNA upstream 54844 24482999 ~ 24501796 (+) True XLOC_025329
TCONS_00049994 mRNA upstream 91846 24458289 ~ 24464794 (+) False XLOC_025328
TCONS_00050001 mRNA downstream 3161 24571163 ~ 24589695 (+) False XLOC_025333
TCONS_00050002 mRNA downstream 9019 24577021 ~ 24591510 (+) True XLOC_025333
TCONS_00050003 mRNA downstream 27920 24595922 ~ 24603705 (+) True XLOC_025334
TCONS_00050004 mRNA downstream 35921 24603923 ~ 24610004 (+) True XLOC_025335
TCONS_00050005 mRNA downstream 44189 24612191 ~ 24627802 (+) False XLOC_025336
TCONS_00049977 other upstream 418732 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 455558 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00049975 other upstream 460604 24095957 ~ 24096036 (+) True XLOC_025316
TCONS_00049958 other upstream 835895 23720651 ~ 23720745 (+) True XLOC_025311
TCONS_00049951 other upstream 860627 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00050021 other downstream 558454 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00050056 other downstream 1576763 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050060 other downstream 1626342 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050071 other downstream 1742492 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050085 other downstream 2503771 27071773 ~ 27074132 (+) True XLOC_025389

Expression Profile

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