RNA id: XM_036955885.1


Basic Information

Item Value
RNA id XM_036955885.1
length 3247
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110498751
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15636400 ~ 15680564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCTTGCAGCAACGCTCGCGGTGTTCTGTTGAAATTCCATTGCcgaacattagctagctaaaataacTGGAACTAAGGATATAGCTTCCGAAGTGTGGCCAACGACCAATACCACCCAAATGTGGATTTAATTTGGGAAAAATATGTCAAAATTCTGGAATGGGATTACTCAAGGATTGCTTTGATGTGTACTGCATTTACCTCCGATTTAGCTGTGGCTACCTCTCAAGCTAGCCGAATCGGAACAATCGGCGGATAACTGGCTAACTAACGTTAAACGtaactaacttagctagctaattcTTTAACGTCAGGACTAGGACGGAGCACGTTTCATCGTTAAAAATACACAAAACGAATGTTACTGTCATGAGTCCAGCCGGGTGCCCCCATGTGAACGGGTTCAAAGTGGATAACTGGAAACAGAATCTACGGGTCATTTACCAATGCTTTGTGTGGAGTGGGTCTGCCGAAACCAGGAAACGCAAGGCCAAGTCGTGTGTCTGTCACATGTGCGGTGCCCACCTGAACCGGCTCCACTCCTGCCTCTACTGCGTCTTCTTCGGCTGCTTCACCAAGAAACACATCCACGAGCACGCCAAAAACAAACGACACAATCTAGCTATAGATCTATTGTATGGAGGTATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGAAATGGAACAGATTGCCAAAGAGGAACAAAGGAAAGCGTGGAAATTGCAAGgtgtagGGGAGAAGTATTCGACGTGGGAGCCCACCAAACGAGAGCTGGAGCTGCTGCGGCACAATCCAAAGCGTCGGAAAATGACGACAAACTGCACCATCGgtcTTCGAGGTCTGATCAACCTGGGCAACACGTGTTTTATGAACTGCATCGTCCAGGCCCTCACCCATACGCCCCTACTGCGGGACTTCTTCCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGTCTGGTGTGTGAGATGTCCCAGCTCTTTCAGGAGttctACTCGGGCCACCGTTCGCCCCACATTCCCTTCCGACTGCTGCACCTGGTGTGGACTCACGCGCGCCACCTAGCAGGCTACGAGCAGCAGGATGCCCACGAGTTCCTCATCGCTGCCCTGGACGTGTTGCACCGCCACTGCAAAGATGATAACGGGAAGAAGGCCAACAACCCCAATAACTGCAACTGCATCATCGACCAAATCTTCACTGGGGGTCTGCAGTCTGACGTCACCTGTCAAGTCTGCCATGGTGTTTCCACAACGATAGACCCGTTCTGGGACATCAGTCTGGACCTGCCGGGGTCGTCCACGCCCTTCTGGCCCCTCAGCCCCGGGGGAGACGGCAGCACACTCAACGGAGAGAGCCACCTCTCAGGGGCCACCACACTCACAGACTGTCTACGCAGGTTTACCCGACCAGAGCACTTAGGGAGCGGCGCCAAGATTAAGTGTAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACTATGAAGAAGCTCCCCATTGTGGCGTGTTTCCACCTCAAAaggTTTGAACACTCTGCGAAGCTACGGAGGAAGATCATTACGTACGTCTCGTTCCCCTTAGAGCTGGACATGACTCCCTTCATGGCCTCCAGCAAAGAGAACAGGATGAACGGACAGTACCAGCAGTCAGTAGACGTTTTCAACGACAATAAGTATTCTCTGTTTGCGGTGGTCAACCACCAGGGTACTCTGGAGAGCGGTCACTACACCACGTTCATCCGGCAGCACATGGACCAGTGGTTCAAGTGTGACGATGCCATCATCACCAAGGCCAGCAACAAGGACGTGTTGGACAGTGAAGGGTACCTTTTGTTCTACCATAAACAGTTTCTGGAGTATGAATAGCCAAGCTTCCTTCAGCACTGATGTCAACAGCCACCAAGAGTTACGCAACAACAAAATGGCAACATAACACAAGCCTGCCTGAAAATCTACATCGGTGAAGATTTGAAGCTGTGGGAATGGAGGAACACCGCATCCTTTCTAACTAAAAGGTCACTCCAAAACCAATCTGCATGGAAGCTACTACGTAGGATCTACTTGATAGGGCGGAAAGGCGGAAGAGCAGGGGGAAGATTGCAGAACGGCGAGAGAAACGAGGAGCCTTTGTTGGAAGATGAGGTgcttcactctctcgctctcctctcctatcGTTTCGGGCAGATGAAGGAACAGTCCGACAGTGGCCACATCTCATAAAAACAGTCAACTTCACGTTGTATTATTTTCTGAAATCCATAATTCCactctcccccccacacacacacccatctctCAAGTGACCAAACATTTCTGAGGGAAGACATTTGGTTGTCTAAGTTCATTATATGCATTGTTATTGCTCTGAATGCAAAACAAGCTGACAGATTATATTAAGAACATTGCAAACACAAGAAGAGATGATTATAATCGTTGTTTGAACTTTTTAGTTTTGAAAATACTGTATGATGAATCTAgcgcacatttttttttttttttttttttttttttttactgaaaaaaagatgggaggtagagaaagggaggaggttGTTCTGTGAAAAGTCCCAccctctttcttttcttttcttttttctgtGAGGGCAGGGAAAATATAGAAGTATATTTTTATAAGTCATTTGAATCCTTGTTCACGGTTTCCAATGTTCCCCCCTCCCTCGAACCCCTGTCCTTGTTATGTTGTGCAGTCAATCATGTATTTTttgaaaaaatgtatgcttcTTCTCATGAGACTGCTGTTGTCGAGCCTTTTTCACATTTGttggttggtttgtttgtttcTTGTGACGGGATAATTATTTTGTTGCTGACATGGTTGTGAAGATGTTTCAGGTGATGCGTTGTTGTGAATAAGAAAAAGACGAGCACTATTCTGACACGGTGTGTATCCTGCCGTGGCGCGATCCGACAGTGTTAAACTTTGGCCACATGTTGctctaattgtgtgtgtgggtgtacgcACATGTGTTGTGCGCATGTTTGTGTACTGAATCAGTACTTTTTTTTTCACATGTTAATTATGTATGTtaaagtatgtatgtatgttaaaAAAGAAAACCAAGGTATAAACTGAGTTCCTTTATCCATGTGgctggaaaaggtcaagggttaTTATGCTAGTCAAAAATACATCCCCCACACTTTATCTGCTGCAAGAACTGGACACTGATGGTGAGACACACAATAAAAAATCTATGTCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1908423 lncRNA downstream 16957 15609714 ~ 15619443 (-) True G1667922
TU1908415 lncRNA downstream 221222 15412404 ~ 15415178 (-) True G1667916
TU1908442 lncRNA downstream 312512 15323655 ~ 15323888 (-) True G1667941
TU1908439 lncRNA downstream 314637 15321538 ~ 15321763 (-) True G1667938
TU1908019 lncRNA downstream 340373 15294521 ~ 15296027 (-) True G1667572
TU1909099 lncRNA upstream 325634 16006198 ~ 16075051 (-) True G1668553
TU1909137 lncRNA upstream 382309 16062873 ~ 16063197 (-) True G1668590
TU1909154 lncRNA upstream 403637 16084201 ~ 16085870 (-) True G1668606
TU1909162 lncRNA upstream 443504 16124068 ~ 16130929 (-) False LOC110499055
TU1909160 lncRNA upstream 448599 16129163 ~ 16130929 (-) True LOC110499055
XR_002469907.2 mRNA downstream 28865 15596147 ~ 15607535 (-) True LOC110499047
LOC110498749 mRNA downstream 59351 15421293 ~ 15577049 (-) False LOC110498749
XR_005037873.1 mRNA downstream 733344 14899047 ~ 14903056 (-) True LOC110499043
XM_036955883.1 mRNA downstream 772688 14856302 ~ 14863712 (-) True vstm4b
XM_021575871.2 mRNA downstream 790988 14843483 ~ 14845412 (-) True LOC110499039
XM_021575882.2 mRNA upstream 15808 15696372 ~ 15707471 (-) False LOC110499049
XM_021575881.2 mRNA upstream 15808 15696372 ~ 15707560 (-) True LOC110499049
XM_021575883.2 mRNA upstream 76095 15756659 ~ 15758251 (-) True LOC110499050
XM_021575382.2 mRNA upstream 224834 15905398 ~ 15907080 (-) True LOC110498752
LOC110498753 mRNA upstream 231881 15912445 ~ 15915316 (-) True LOC110498753
TU1908420 other downstream 59709 15566558 ~ 15576691 (-) True LOC110498749
TU1908414 other downstream 221222 15339685 ~ 15415178 (-) False G1667916
TU1907535 other downstream 738719 14890375 ~ 14897681 (-) True G1667100
TU1907305 other downstream 1001960 14624355 ~ 14634440 (-) True LOC110499033
TU1907198 other downstream 1211086 14424973 ~ 14425314 (-) True G1666788
TU1909325 other upstream 656712 16337276 ~ 16337734 (-) True G1668767
TU1909831 other upstream 866784 16547348 ~ 16549132 (-) True LOC110499060
TU1909961 other upstream 1073462 16754026 ~ 16795255 (-) True G1669343
TU1910658 other upstream 1589219 17269783 ~ 17270148 (-) True G1669974
TU1910760 other upstream 1748051 17428615 ~ 17434040 (-) True LOC110498759

Expression Profile