RNA id: TCONS_00004734


Basic Information

Item Value
RNA id TCONS_00004734
length 1449
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_002543
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5000623 ~ 5024520 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGATCTCCGTCCGTCCGCCATTTTAATCAACGCGGCACTTTATTCGTGTTGAAGTGTTTGACCTTTTAAAACCGGCGTAATATAATCTATAATATATATCTCGCGGAGGATCAAAATAACTACACATACTTCAAAATGCAGGCCGAAGAGCAAGGTGACTTTAGCACCGATGAGTTTCCCGAAGGCTCCAAAATAAACGCGAGTAAAAACCAGGAGGATGACGGGAAAATGTTCATTGGTGGACTCAGTTGGGACACCAGCAAGAAAGACCTCACTGATTACCTGTCCAGGTTTGGAGAGGTCCTCGACTGCACCATCAAAACAGACCCATTGACCGGCCGCTCCAGGGGCTTTGGATTCGTGCTCTTCAAAGATGCTGAGAGCGTGGACCGGGTGTTGGAGTTGACGGAGCACAAGCTGGATGGTAAATTAATTGATCCCAAGAGAGCCAAAGCCATCAAGGGCAAGGAACCCCCTAAGAAGGTTTTCGTTGGTGGTCTCAGTCCAGACATTACTGAGGAACAGCTCCGGGAATACTTCGGAGTTTATGGGGAAaTTGAAAGCATCGAGCTTCCCACAGACACCAAGACGAATGAGCGACGGGGATTCTGCTTTGTGACATTCGCTTTAGAAGAGCCTGTTCAGAAACTGCTGGAGAACAGATACCATCAAATCGGATCAGGGAAGTGTGAAATTAAAGTAGCCCAGCCTAAAGAAGTCTACAGACAGCAGCAGAACAGAGACCGGGGCTTCGGAGGAGGACGAGGAGGCTTCAGGGGCCGTGGTGGAAGAGGACAAGGCTTTAATCAAGGGTACAACAACTACTACGGCCAGAACTATGGCGGAGGCTACGGCAACGGATACAACCAGGGCTACAACGGCTATTCTGGCTATGACTATTCAGGATACAACTATCAGAATTATGGCTATGGACAAGGCTATGATGATTACAGTGgtCAACAGAGCAGCTATGGCAAGGCCTCACGGGACAGCGGAAACCATCAGAACAGCTACCAGCCGTATTGATGAAGTGGCGAAACAATGCGGGGACTTCATTGCAGGCCGTGTGTCACCTGACCACGTCATTCTCTGGGCGTCGCACATAGCGGGCAGAGAGCACGGCATGCACGAGAAAGCGCTGTCCTGTGGTGGGCAGGTTGACTTCGACATTGCTCCTCGGAGGCAGCTTGTGTGGAATCCTGTCCTTAAACAACTATTAAAAACGTTATTCGGTCCTCTGGGGACAAATCCAGTGTCTAACCTTGTAAATAGCGAGGTGTTTCGTTTCCCAAGTTTGTCTTATTCTGTGCTTTGTTCAGATTGAACCTGTAGGTTTTGTGCTGATGTGTTCTTAAGTCTTGATTAGGAAAAGTgtcctttattttgtatttttagttCTTTTCCTGACGTTTTTGGATAAAGGGATTAAAAATTCTGAGAAAACCAA

Function

GO:

id name namespace
GO:0005654 nucleoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2717 Predicted to enable poly(A) binding activity and poly(G) binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like).

Ensembl:

ensembl_id ENSDART00000020631

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004732 lncRNA downstream 6941 5003992 ~ 5010275 (-) False XLOC_002543
TCONS_00005746 lncRNA downstream 95165 4919323 ~ 4922051 (-) True XLOC_002540
TCONS_00005985 lncRNA downstream 198610 4812304 ~ 4818606 (-) True XLOC_002539
TCONS_00005984 lncRNA downstream 198905 4812304 ~ 4818311 (-) False XLOC_002539
TCONS_00005745 lncRNA downstream 434196 4582362 ~ 4583020 (-) True XLOC_002538
TCONS_00004741 lncRNA upstream 28342 5052862 ~ 5058823 (-) True XLOC_002544
TCONS_00005987 lncRNA upstream 197395 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00005988 lncRNA upstream 197395 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00004744 lncRNA upstream 500873 5525393 ~ 5527364 (-) True XLOC_002547
TCONS_00005989 lncRNA upstream 764100 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00004730 mRNA downstream 219 5000623 ~ 5016997 (-) False XLOC_002543
TCONS_00004729 mRNA downstream 37066 4969634 ~ 4980150 (-) True XLOC_002542
TCONS_00004728 mRNA downstream 55287 4953352 ~ 4961929 (-) True XLOC_002541
TCONS_00004727 mRNA downstream 55293 4940767 ~ 4961923 (-) False XLOC_002541
TCONS_00004726 mRNA downstream 642026 4367430 ~ 4375190 (-) True XLOC_002536
TCONS_00004739 mRNA upstream 17457 5041977 ~ 5058823 (-) False XLOC_002544
TCONS_00004740 mRNA upstream 17749 5042269 ~ 5053589 (-) False XLOC_002544
TCONS_00004742 mRNA upstream 67991 5092511 ~ 5135788 (-) False XLOC_002545
TCONS_00004743 mRNA upstream 69603 5094123 ~ 5135788 (-) True XLOC_002545
TCONS_00004745 mRNA upstream 509323 5533843 ~ 5568379 (-) False XLOC_002548
TCONS_00004723 other downstream 1248450 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 1510562 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004703 other downstream 2141481 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 2141481 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 4677189 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004756 other upstream 925943 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 1393185 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 1448186 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 1586555 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 1598049 6622569 ~ 6623404 (-) False XLOC_002562

Expression Profile

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