RNA id: TU1909447


Basic Information

Item Value
RNA id TU1909447
length 1608
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110498755
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16535724 ~ 16540437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACATTAAATCTATTGAAGCCTATGGGAATTTCAAGGCAatgattgattaaaaaaataaaagcttaTCAACATGAGTCACATTTGGTTAGAGAAACTACCAGAGTAGCAGGTTTTTGCCCGGGAACCGAAAGGCTATTGTGTTTCAGAAAGCATTGTCTTTCTGCAGAGTTGAAGCAGAAAGAAGCATACAATgttagagagaggacatgggctctTTATCCTCATGAAAGGTTAAAGGATGAGACTGACCTTTCTAGCATCAGCTGGGCTTTGGGAACAGAACACACAGGGGCAACTCTTTCTGGCTTTTTCCCTTCCGCTCTGGGGTATGTTTTACAAGCCAAAGACAGAAGTCCAAAGCACTATTGCTTTTCACATAGACTCAGACACACAACTATGCCCTccttttgacacacacacacaccacagaacacTGTTATCTGTACATGGCATCAGAGTAGGTCTGCAGGCTATGGAAGCAAAAAGAGAACATATCACTCTAGATTACATCAACACAAGAGCTTGATTCAATCAATATCATCAGaatcacttacacacacacacacaggtctatgAACAGAACACAACCGAGACTTCGTGACCTGCGATCAGGGAGAGGGAAAACATGAACCCACACCAAAATAAACTCTGATAAACCATTTGCATTTTCATAACATTCTATTACCAACGTTCAATAATCTTTTTCACATCAACCCCAAATATTTGTAGAAGATATGGCTTTGTTTTGTTTACTAGAGAGTACATGAACCGTCTCACCTCCTGTAAACGTTAAAGGTTCTGTTGTTCACACTACATACCTAAAGGCCTTTTGTGTGATGTTTCAATGAGTGCATCACTAGGCCATGGCTGAACAAGGGTCTGTgtacagaaaacatagaatgggGCAGCTATATGGGGTGGATGTTATATATTGTATAGGTAAACTAGCACTTGCGGGGGAAAAAGATTAGCCTATGGTTTGAGAGACAATGGGAATGGTCAGTGACGTTTAAAAAGGTAACATCTAGTCACTATGACGCAACAGAGCACTCTTGTCAGTAGAAGAGTATAAAAGGCCCTATGACCCTGTTGGAGGCTACGGTGCCACGATCAAGCCCTCCAACCATGGGAAAGGGTGACCGGCGGTCACTGGGTGGCCTACGAGAAGTCCAACTTCAACGGCTACCAGTACATCCTGAACCAGGGCGAGTACCCAGACTACCACCACTGGATGGGCTTCAACAACTGCATCCGTTCCTGCCAGATGTTCCCCCCCTACAGAGGAGCCTACAGGATGAGGATCTACAACAGGCCCGagatgtctggtcacatgatgGAGTTCATGGACGACTGCCCCAACGTGTACGAGCGTTTCCGCCACCGTGACATCTTCTCCTCCAATGTCATGGAAGGCTACTGGGTGTTCTATGAGCACCCCAACTACAGGGGTCGTCAGTATTTCCTCCGCCCCGGCGAGTACAGGGCTTGCAGCGATTGGGGCTGCCACAACCCCATGGTGGGCTCCTTCAGGAGAATGAGGAGTGGCCTGTAAGCTTCTCACCTATGGACTGTAACAAAGTGATTAAACGTGCTGGTTTTAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1909410 lncRNA upstream 49344 16486105 ~ 16486380 (+) True G1668836
TU1909395 lncRNA upstream 82320 16452989 ~ 16453404 (+) True G1668821
TU1909001 lncRNA upstream 192676 16342817 ~ 16343048 (+) True G1668458
TU1909000 lncRNA upstream 193105 16342200 ~ 16342619 (+) True G1668457
TU1908999 lncRNA upstream 193883 16341613 ~ 16341841 (+) True G1668456
TU1909434 lncRNA downstream 6946 16547383 ~ 16548670 (+) True G1668860
TU1909441 lncRNA downstream 74299 16614736 ~ 16614969 (+) True G1668867
TU1909505 lncRNA downstream 75363 16615800 ~ 16616015 (+) True G1668923
TU1909508 lncRNA downstream 77975 16618412 ~ 16618683 (+) True G1668926
TU1909512 lncRNA downstream 98100 16638537 ~ 16638927 (+) True G1668930
XM_021575895.2 mRNA upstream 87025 16349990 ~ 16448699 (+) False LOC110499059
XM_021575898.2 mRNA upstream 87025 16349990 ~ 16448699 (+) False LOC110499059
XM_021575904.2 mRNA upstream 87025 16349991 ~ 16448699 (+) False LOC110499059
XM_021575910.2 mRNA upstream 87025 16349991 ~ 16448699 (+) False LOC110499059
XM_021575903.2 mRNA upstream 87025 16349992 ~ 16448699 (+) False LOC110499059
XM_021576717.2 mRNA downstream 505 16540942 ~ 16545004 (+) True LOC110499586
XM_021575935.2 mRNA downstream 20411 16560848 ~ 16592647 (+) False LOC110499061
XM_021575936.2 mRNA downstream 20411 16560848 ~ 16592647 (+) True LOC110499061
XM_021575938.2 mRNA downstream 64614 16605051 ~ 16611216 (+) False LOC110499062
XM_021575940.2 mRNA downstream 64886 16605323 ~ 16611216 (+) True LOC110499062
TU1908875 other upstream 229503 16141278 ~ 16306221 (+) False LOC110499058
TU1908878 other upstream 379439 16141278 ~ 16156285 (+) True LOC110499058
TU1908864 other upstream 399957 16134470 ~ 16135767 (+) True LOC110499057
TU1908052 other upstream 1194540 15339612 ~ 15341184 (+) False G1667601
TU1908054 other upstream 1194540 15339684 ~ 15341184 (+) True G1667601
TU1909427 other downstream 117837 16658274 ~ 16686095 (+) False LOC110498756
TU1910465 other downstream 913050 17453487 ~ 17454094 (+) True LOC118941995
TU1910783 other downstream 1032394 17572831 ~ 17577262 (+) True G1670091
TU1910833 other downstream 1176599 17717036 ~ 17740543 (+) False G1670125
TU1910846 other downstream 1176599 17717036 ~ 17779374 (+) False G1670125

Expression Profile