RNA id: XM_021576718.2


Basic Information

Item Value
RNA id XM_021576718.2
length 923
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC110499587
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16776151 ~ 16778273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTAACAGATGGGCTGCTAACTATTCTGAGTAGGCTACTTGTTCTGTCAGTCAACCACAAAAGAACTATAAATGTCCAAGAGCATATTATCTCCCTAGAATCAACAAGATGGCTATGCTACCGAAAAACCTTCCCAGGCCAGAGGACTGTCAAGGAGCACAGGCTCTATGGTATGACCGGAAAAAATATGTCATCATTAATTTCATGGTGCAAAACCCCAAGGATGTTGAGGTTGATATTCAGGATACCTTTATAGTTTTAAGTTGTAAAGATGTCGATGACAACAGCGTCTACAATCACATTTATTTCTATGACAAAGTCATCAAATTTGACTCCCAAGTGAAGGTCCATGACCGCAGCATCCACATCTTGATTAGGAAGGCTAAAGAAAATGTAGCATGGCCTCGTCTTCAGAAAGATGCCGATCTCAAGCCAAATTGGATGGCTGTAGACTTTGATAACTGGAGAGACTGGGAGAATGAAGAGGATGAGGGAATGGCGGAGTATGAGCAATATTTTGACATGATTCAGGATATGGGGAACAAGAAAGAAGGGCCACCTGCGATGGATGATCTGGATGATCTGAGTGATTGAATACTTTTCTGAAGAGAGCTTTCCTCTGCATTGGAAAGCTTGATGTGCATTGAAAATCGCTGATGAAGACTCATCAAAGATCATGCCATGTTGATGGATTTGTGTATTTGTTGATGATTGCTGTGAATGCGATGTGGTACTGGTACTGTTGTCTGTGTAATTTGTATTACTATCTATTGAATGTTATTTATTAAATCAACTGAAATCTTGTTTCTACTTTTCTGATACGTAACCTCTTaaatatactgaataaaaatataaactcaacatgtaaaatgttgggaccatgtttcatgagctgaaataaaagatcccagaaatgttccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1909890 lncRNA downstream 69923 16699815 ~ 16706228 (-) True LOC110498757
TU1909903 lncRNA downstream 118452 16657389 ~ 16657699 (-) True G1669286
TU1909902 lncRNA downstream 123096 16652847 ~ 16653055 (-) True G1669285
TU1909897 lncRNA downstream 130516 16645410 ~ 16645635 (-) True G1669280
TU1909875 lncRNA downstream 155560 16620374 ~ 16620591 (-) True G1669259
TU1909983 lncRNA upstream 24564 16802837 ~ 16803038 (-) True G1669363
TU1909985 lncRNA upstream 26193 16804466 ~ 16804898 (-) True G1669365
TU1910000 lncRNA upstream 66237 16844510 ~ 16844709 (-) True G1669380
TU1910022 lncRNA upstream 99165 16877438 ~ 16877824 (-) True G1669402
TU1910025 lncRNA upstream 101627 16879900 ~ 16880101 (-) True G1669405
XM_036955901.1 mRNA downstream 2462 16704773 ~ 16773689 (-) False LOC110498757
XM_036955902.1 mRNA downstream 2462 16707505 ~ 16773689 (-) False LOC110498757
XR_005037936.1 mRNA downstream 7297 16754233 ~ 16768854 (-) True LOC118942039
XM_036955897.1 mRNA downstream 215410 16547347 ~ 16560741 (-) False LOC110499060
XM_021575933.2 mRNA downstream 218760 16549481 ~ 16557391 (-) False LOC110499060
XM_021575942.2 mRNA upstream 6552 16784825 ~ 16789220 (-) True LOC110499065
XM_021575945.2 mRNA upstream 27615 16805888 ~ 16813083 (-) True psme3
XM_021575961.2 mRNA upstream 461592 17239865 ~ 17253625 (-) False LOC110499077
XM_021575960.2 mRNA upstream 496177 17274450 ~ 17285270 (-) True LOC110499076
XM_036955911.1 mRNA upstream 567893 17346166 ~ 17350460 (-) True LOC118942041
TU1909831 other downstream 227019 16547348 ~ 16549132 (-) True LOC110499060
TU1909325 other downstream 438417 16337276 ~ 16337734 (-) True G1668767
TU1908412 other downstream 1131226 15637145 ~ 15644925 (-) False LOC110498751
TU1908420 other downstream 1199460 15566558 ~ 15576691 (-) True LOC110498749
TU1908414 other downstream 1360973 15339685 ~ 15415178 (-) False G1667916
TU1910658 other upstream 491510 17269783 ~ 17270148 (-) True G1669974
TU1910760 other upstream 650342 17428615 ~ 17434040 (-) True LOC110498759
TU1910728 other upstream 664317 17442590 ~ 17452727 (-) True LOC110498760
TU1910809 other upstream 818342 17596615 ~ 17625448 (-) True G1670109
TU1910889 other upstream 907703 17685976 ~ 17691866 (-) True G1670145

Expression Profile