RNA id: XM_021575963.2


Basic Information

Item Value
RNA id XM_021575963.2
length 3215
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110499078
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17367169 ~ 17374315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGCAGTATTACAGTGCCCCAAGGCAATGCTCCTAGTCAATATCTTCTACACACTCGCTTTCGCGCTCCCATTTGAGCTGGATATGCGCTGTCTGCTTGTACCGCTATACGCAGAGAATTGACATACAGACACACCACGGACACACACCAGGACCTTCTCCTTAGTGGAAGTTGACAGAAGACATTGGATCATCACTCAGTCTTCACTGCAAGCCACCATCTTAGTTCCTACCCACCTGGATCCCAGGTTAAAGAATCTTTAAAGTCATGTAAATAAAGGCTAAAGAAGTGTACTACATCTAGCCCGAGAAAGAACGAGAGCCTGCATCCCTACAGCCTCATCTCTCCAAGACTTTTACACACCTTCTCCTCAGAATAACCTACATTGTGAGGACAGAATTATTCCCCATCATGTCCAAGGAGGACCACACGTGCAAGCACAAGGAACGCAAGCCCAAGAAGCCCCACTACATCCCACGGCCATGGGGCAAACCTTACAACTATAAGTGCTTCCAGTGCCCCTTCACCTGCATGGAGAAGTCCCATCTGTACAACCACATGAAGTACAGCCTCTGTaagaactccctgtctctgttAATCGAGTCCGACTGGCCATACAAGAAGGGCAACCTTCTGCACCTGGACCAGCTCCGGCCCCTCCAGCAAGCCCACTCTCTCCGGACCACAGCTGGGAAAGAGGAGCCCGAGCCAGCTACAGGGAATGAGGAGAGGCCCCGGCAGCAACAAGacatggaggaggaaggggagagcccgggaggagaggaggaggaggaggaggaggagagcggacAAGGGGCTGAAGTCACTGAGATGACCAGAGAGTGCTCCAACAGGGACTCAGATGGCACAGCCAAGAGAACCAGTAACCATCCTGAGCCGGAGCTGCTGATGACTGATGTGTTCTCCCTGGAGGATCAGCTCTTGAGAGCACACTCGGTGGAGAACCAGCTAAAGCACTACAAGCTGTCCAAGACGTTCCTGACTGCGCCTGACCTGCTGTCGGAGCAGTGGCGCCTGCTTGCCACCAGCCACACCATGGCCGAGGGCACCCAGCCCAGAGTGAGCGACTCCATCCCATGCTACCCGCCTCCACCCGGCCTGGTGGACTACCAGGACCCCACAGAACTCAACCTGTCTATCCTTGGGGTGGGATACCCCCTGAGCCCCAGCCTCTTCTCCTATATGAATTCAATGAATGCAATCCCCACTGCTGACACCAATATAACCGTACCGACTCAAGCGCAGCTAGCCCAGCTCCCCTTCCTGGCATCAGCCGCTCAGCTCTTGCACCCGGCATCCGGTGTGCACCACCCCATCAACCGGACCCTCCTGCCGTCCCGCTTCTACTACCCATTCCTCTGCGAGCATGCCTTTGGAGCAGCCTCCACTAAGAGCGACGTCAACAAGGTTCTCAAAACCTCTGCGAATGGCCTGGAGCCCAATCCCAGTTGCCAGCCCAAAGTCAACTTGTGGAAGGTGCCTGCTCTGAGGCCaggtaccaccaccacctcatccCCTACAGCATCACCAGACCCTTCCTACAGGACAGGGGACAAGCTCCAGGCTGCAGCCAAGGAGGGGAAACCAGGATGGGGCCTCAAGAGAACAGGAGCCCTCTTGGGGACCGACGAGTCCCCTGCAGAGAAGAGGCCAGCCCTCGGGTTCACCCTGGATctactcaagaacattcagaataCCATACCCTTCTCCATGGCAACAGAAAAGCTCTTCCTCCACAGCAGTTTTACAAATGCTCAGTCTCAGTCACGGCCATCGGAGCAGTGCTGCACAAATAACCCCGTGAGCCGAGTCAGTGAATCGCCCTCTCTTCCGAATTGTAGAAGAACCAGCAGCCAGGACTCTACCATCGGTCAAGGGACGGGCGAGGCATCCTCAAAATCAGAATCAGCTGCTGCCCTCCTCAGCAACCTTTCCAACGCTCTACAGGAGTACCAGGATGCCGAATGCAAGATCTCCCACCTGGAGAAAGAGGACCTCATCGCTCAGGGACACCTATGGGAACACCTGAACAAGATCCGCAGCGAGCTCTCCCACATTCACCATGCACTGGAGAGGAAAGCCCGTCAGACGGAAGGACCCCTGGATCTCTCCATCAAGAAGGAACAACCCGTGGTGACTGAggtggtcgcggccggttaccaGGGCCTCATGGGAGCCTCACTTAAAGACGACATCACCACGGAGACTGAGGAAGACgatgaggaggcagaggaggaggaagcggaggaggaggaagatgagaatGAGATGAGGAAGGAAGCGATGAAGGCTTCATTAGAGCGTCGAAAGCAATCGCTGGACGTGCTGATCAAGATGAGTCAGGCTGGGGTGCAGGTGGTGAAGACGGAGGTCCTGTCAACAGGGGGGTTGGGGTTGAGGCCAAGCCAGGCGGAGGGTCTCTGGCCAGGCAGGACCACCAAGTGTGAGGCTGACTCCAGCGTGCTACTTTGCACTGATGGACTTCCCCTCGCAGTCTTCAATGACTTCCCCCCCTCCTCCAACAAAAACTCCAAGAAGCCCCTGTCCATTCAGTGACTAGGGGTGCCACAATGTCCGCCAAGCCCCCTGACAGCAACAGACTCCTAAACCTCTCCTGAGAAGCTAAATTTCCCAGCTTGCATTGCTCCTGAAAGCCCTCCTGAAGACAACACACTTTTGTTCATGCACTCCCTATGACTCTCTGTCCAGGCAAGAACTCTCACCACTAATATCCTCTCAAAACACCACCGCCATCTCCCCCAAAAGATAACAAAGCTTAGCACCTTAAATAAAAGTGGGGGAATGAAGAAGTGATGTGGATTGTTGATACAGGATTATTTGGGAAAACAATTCAAATGGGCAGTAGTGATGCTTGAAATGTTGTTGTAGGACAAAAAATAAACTTGCACTTATAGAGCGACATTGAACACATGTAAATGAAAATATGTTTTATGATCTAAGGTATGAATCCTCTTACAATTCTGTCCCAAGTTGAGAGACAATCATTTGAACTGATTTGTACATATTGTAATGAATTTGATTGATGTAGTTAAAATTAATTAAGAAGTAAATGTTTTATATGAATGATGTCTTGTTGGATTGTCTTGTGTGTCTGATTAAACCATTCCACCGTACATGTCCACAGTACACATCTGTAACAAATGCACTTCCATTTATTTGAATAAAGAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910683 lncRNA downstream 49165 17317705 ~ 17318004 (-) True G1669999
TU1910681 lncRNA downstream 52681 17314273 ~ 17314488 (-) True G1669997
TU1910678 lncRNA downstream 56525 17309976 ~ 17310644 (-) True G1669994
TU1910647 lncRNA downstream 111151 17255803 ~ 17256018 (-) True G1669964
TU1910637 lncRNA downstream 113606 17252848 ~ 17253563 (-) True LOC110499077
TU1910729 lncRNA upstream 75126 17449441 ~ 17451269 (-) True G1670038
TU1910730 lncRNA upstream 78722 17453037 ~ 17453253 (-) True G1670039
TU1910774 lncRNA upstream 129336 17503651 ~ 17504005 (-) True G1670083
TU1910781 lncRNA upstream 197102 17571417 ~ 17571756 (-) True G1670089
TU1910782 lncRNA upstream 197613 17571928 ~ 17572320 (-) True G1670090
XM_036955554.1 mRNA downstream 4571 17359654 ~ 17362598 (-) True LOC118942007
XM_036955911.1 mRNA downstream 16709 17346166 ~ 17350460 (-) True LOC118942041
XM_021575960.2 mRNA downstream 81899 17274450 ~ 17285270 (-) True LOC110499076
XM_021575961.2 mRNA downstream 113544 17239865 ~ 17253625 (-) False LOC110499077
XM_021575945.2 mRNA downstream 554086 16805888 ~ 16813083 (-) True psme3
LOC110498759 mRNA upstream 54371 17428686 ~ 17431056 (-) False LOC110498759
LOC110498760 mRNA upstream 68473 17442788 ~ 17452721 (-) False LOC110498760
XR_005037946.1 mRNA upstream 999460 18373775 ~ 18381647 (-) False LOC110512504
XR_005037945.1 mRNA upstream 999462 18373777 ~ 18380255 (-) False LOC110512504
XR_005037949.1 mRNA upstream 999462 18373777 ~ 18380255 (-) False LOC110512504
TU1910658 other downstream 97021 17269783 ~ 17270148 (-) True G1669974
TU1909961 other downstream 571914 16754026 ~ 16795255 (-) True G1669343
TU1909831 other downstream 818037 16547348 ~ 16549132 (-) True LOC110499060
TU1909325 other downstream 1029435 16337276 ~ 16337734 (-) True G1668767
TU1908412 other downstream 1722244 15637145 ~ 15644925 (-) False LOC110498751
TU1910760 other upstream 54300 17428615 ~ 17434040 (-) True LOC110498759
TU1910728 other upstream 68275 17442590 ~ 17452727 (-) True LOC110498760
TU1910809 other upstream 222300 17596615 ~ 17625448 (-) True G1670109
TU1910889 other upstream 311661 17685976 ~ 17691866 (-) True G1670145
TU1910885 other upstream 313420 17687735 ~ 17694584 (-) True G1670142

Expression Profile