Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1910728 |
| length | 1038 |
| RNA type | TUCP |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC110498760 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 17442590 ~ 17452727 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | biological_process |
| GO:0031398 | positive regulation of protein ubiquitination | biological_process |
| GO:0030579 | ubiquitin-dependent SMAD protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0031943 | regulation of glucocorticoid metabolic process | biological_process |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0046332 | SMAD binding | molecular_function |
| GO:0030544 | Hsp70 protein binding | molecular_function |
| GO:0051879 | Hsp90 protein binding | molecular_function |
| GO:0030911 | TPR domain binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1910683 | lncRNA | downstream | 124586 | 17317705 ~ 17318004 (-) | True | G1669999 |
| TU1910681 | lncRNA | downstream | 128102 | 17314273 ~ 17314488 (-) | True | G1669997 |
| TU1910678 | lncRNA | downstream | 131946 | 17309976 ~ 17310644 (-) | True | G1669994 |
| TU1910647 | lncRNA | downstream | 186572 | 17255803 ~ 17256018 (-) | True | G1669964 |
| TU1910637 | lncRNA | downstream | 189027 | 17252848 ~ 17253563 (-) | True | LOC110499077 |
| TU1910730 | lncRNA | upstream | 310 | 17453037 ~ 17453253 (-) | True | G1670039 |
| TU1910774 | lncRNA | upstream | 50924 | 17503651 ~ 17504005 (-) | True | G1670083 |
| TU1910781 | lncRNA | upstream | 118690 | 17571417 ~ 17571756 (-) | True | G1670089 |
| TU1910782 | lncRNA | upstream | 119201 | 17571928 ~ 17572320 (-) | True | G1670090 |
| TU1910804 | lncRNA | upstream | 135514 | 17588241 ~ 17607901 (-) | False | G1670104 |
| LOC110498759 | mRNA | downstream | 11534 | 17428686 ~ 17431056 (-) | False | LOC110498759 |
| XM_021575963.2 | mRNA | downstream | 68275 | 17367169 ~ 17374315 (-) | True | LOC110499078 |
| XM_036955554.1 | mRNA | downstream | 79992 | 17359654 ~ 17362598 (-) | True | LOC118942007 |
| XM_036955911.1 | mRNA | downstream | 92130 | 17346166 ~ 17350460 (-) | True | LOC118942041 |
| XM_021575960.2 | mRNA | downstream | 157320 | 17274450 ~ 17285270 (-) | True | LOC110499076 |
| XR_005037946.1 | mRNA | upstream | 921048 | 18373775 ~ 18381647 (-) | False | LOC110512504 |
| XR_005037945.1 | mRNA | upstream | 921050 | 18373777 ~ 18380255 (-) | False | LOC110512504 |
| XR_005037949.1 | mRNA | upstream | 921050 | 18373777 ~ 18380255 (-) | False | LOC110512504 |
| XR_005037948.1 | mRNA | upstream | 921051 | 18373778 ~ 18380257 (-) | False | LOC110512504 |
| XR_005037947.1 | mRNA | upstream | 921051 | 18373778 ~ 18380258 (-) | False | LOC110512504 |
| TU1910760 | other | downstream | 8550 | 17428615 ~ 17434040 (-) | True | LOC110498759 |
| TU1910658 | other | downstream | 172442 | 17269783 ~ 17270148 (-) | True | G1669974 |
| TU1909961 | other | downstream | 647335 | 16754026 ~ 16795255 (-) | True | G1669343 |
| TU1909831 | other | downstream | 893458 | 16547348 ~ 16549132 (-) | True | LOC110499060 |
| TU1909325 | other | downstream | 1104856 | 16337276 ~ 16337734 (-) | True | G1668767 |
| TU1910809 | other | upstream | 143888 | 17596615 ~ 17625448 (-) | True | G1670109 |
| TU1910889 | other | upstream | 233249 | 17685976 ~ 17691866 (-) | True | G1670145 |
| TU1910885 | other | upstream | 235008 | 17687735 ~ 17694584 (-) | True | G1670142 |
| TU1912370 | other | upstream | 569717 | 18022444 ~ 18027722 (-) | False | G1671478 |
| TU1912371 | other | upstream | 569717 | 18022444 ~ 18028228 (-) | False | G1671478 |
