RNA id: XR_005037942.1


Basic Information

Item Value
RNA id XR_005037942.1
length 3595
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118942044
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17600129 ~ 17605166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgtggtaggcaattatagaattttgagttttaagtctttatgttaagaactgacttatttacggagtgtttagtgagtgtgtgtgttatttcagaaaatcacagaaatctcgtagAACTCCGAAGCACACAttaaaaagatttgtatgaacacgctgcaactggatctgtaactgtttaaaaaaaattgagtttggtgacaaaccacacaAATTACTCGCCAGACAACTTCGAAAAAATGTGAGTGACAGAATGATTCACAAAGTTAAATCTGCATCTGGGGAATTACTCTCTTCCCCCAAAGACATCAATGACAGATTCCGGCAGTTTTATGAGACTCTATATACATCTAAAGCGGATCCTATAACCCCTTAATTATGCAAACATTTTTGGAGGACTGTAATCTTCCTGCCCTTGAACCAGGAAGATTATAACTTCCTGAATAAGGAAATATCTCTTGATGAAATTCAAGAAACAATTAAATCTCTAAAGAGTGGCACCCCGGGCCCAGATGGATACCCTGGTGAATTCTATAAAACATTCAGCAACATGCTCTCTCCCTACCTGCACAAAATGTTTGTTCAGGCCAATGAGGATGGAGCTCTCCCTTCATTACAGTTATACATAAGAAGGGTAAGGATCCAGAAGAGGTAGGGtcatacagaccaatatctctcctTAATACAGACCAAAAGATTTTAGCAGGCTTAGCACTTTAATTGGCAAATTGGTCCATTCGGATCAGACCGGCTTTATCCCTAACAGAAACGCATTCTTCAATCTCAATATTATGTATTCTCAGATGTTACCCAACGTGGACCTTGCCGTCATATCTCTTGACGCCGAAAAGGCCTTTGACCAAGTTCctacagaaatgtaatattggaGATGAGTTCATAAATTGGATCCAGCTTTTATATAGGAACCCCTGTGCCAGAATACTCACTAACCAATCATTGTCGCCCCGATTTAACCTTAACGGGGGGACAAGGCAGGGTTGTGCGCTGTCGCCTATGCTCTTCGCCCTAATTATCGAACCGCTCGCTCAGACGATTAGATCTCATGCAGCAATCCACAGCTATAATACTAAAGATACTCTAAATAAGATTTCCCTATACGcagatgacatcctcctcttGATGTGATCAATTTGTTTGGTACCTTCTCGGGATACAGAATAAATTGGAACAAGAGTGAATTAATGCCCATACGGTCGCAAAACACCTCCTGGCTAGAACCTCTCCCATTTAAGTTATCTTCAGAAAAATTGACCTACCTAGGAATTGTAGTTACCAATCAATACACCTTACTATTTAAAGAGAATTTCCCCCCTCTGATACAAAAACTCAAAGCAAACATACTTTTACATAAACATATTTTGGAgaactctcccaatttctctACTCGGAAGAATTAATGCCATTAAAATGGTCTTCTTCCCACAACTTCTCTACCTATATCAGAACATCCCAGTATTCATACCTAAATCCTTTCATAAACAACTGGACTCAATTATCAATCCTTTcatctgggattataaaacacacaggataggtaAAAAACACCTCTGTAAATCCAAGATGGAAGGAGGATTGTCTCTCCCAAATTGTATATTTTATTGGGCCGCTAACCTGGGCTGCTAACCTCCGCGTTGTTACGTTTCTGCTGGATGACGCACTTCCGGCATCCAGCTGGCTTACTATGGAGCGTGAGGAGTGTCACCCCTTCTCTATTGGTGCTGTGATTTTGTCGCCTGTCAATCTGGAGATGTCACTTTATTGTAACAATCCTATTATACATAGCACAGTCCGAATATGGAAGCAAATTAAAGTCCACTTTGAGCTTAGACCAATGTCATTCATGCTCCCTGTCGCCAGGAATCCCTCCTTTGCCCCTTCTAACCTTGATAACACCTTTGAGCGATGGGGGGAGCTGGGGATAAGTACCATAGGGGATTTATACATAGAAGGGACCTTTGCTTCCTTTGAGTTGCTGAGGGAAACACaattttttcagatacctacaAATTAGAGACTACGTTAGAAAACACCTCCCAACATTTGGGAATGCTAAACCTTCCATGTTTGACAGATGCATAAAAATATGCCCCACCTCAGATAAACTGATATTGATATATGATGCTTTTCAATCTGTTAGCACACCTTCTACAGatgccatcaaggcaaaatgggaggaagaactagggACTGACATTTCTGTGGCAGACTGGGAAGAGAGCTTGGAGTATATCCACACATGCTCCATTAATTCCAGACATCGTCTCATACAATTCAAGGTCATTACCTGGACCAGAAGAGGCTAAAACAGGGCCTGTACCGCCACCCATGGGATGACATCTCCTATGTGCTTCCTGAACACATGTCAATGTAACTGATGACAGCGAGTCGGCACCTCTGGATGTCAACACTCGGATATGACGGGAAGCATTTTCACCTTATCACTTCAACAACCTCTGCCTTTGGGCAGGGTAAATCCAGAGGTGGGGGGGATATGGGGGAAGAGGGGAGCGTTAGTTTTATTAGGTCACTAAAGAAAAAGGGAATAATTTACGTTATTTAAGTTATGAGTTCAATCGTTAACAAAAAAAAGGAGCCGAACCAATGCAAGCTGCAGCTGTGGTCACACTAGGTGACTGGGAAAACTAGGTCACCGGTTCACAAATGGGATAGTGGCTTTTGACCATGCCACCTGGTTGTTTGGTCCATCGCCTACTCGCttatattttattttcatatcTCTTACTAAACTCTCAAACGATTAACAGTTGGTTGAGCTGTATAATATAGGGCTAGCCCTGCTTTAGGCCTCTAGGGTGTGTGCTGTTGAAAGTTAGCATGCTTTCTGGGTGACTTGGTAATGCACATAACATGAACACCGGCTTGCCTATGGAGAAGTAGTCTTGGTCGGTAAACCTGCATCCCTCAATGGAGTGTAAGCCTTGAACGATCCACCGTCATGTACATTACAAAACCAAAGTATTGTGTGAGGTTTTATTTACACATTTAATCTAGTTTCCGACCTTAATCCCCTTCCAAAGTTGTGTAGCCTATTATGGTGTGTACTCTGTGGCTGTTCAAGATAAGGGGGCACGGTTTAACTAGCTGAATGTTAGTGTTGATTTGCcactgcctttttttttttttttaggatccCAATTATCTGTTGCAaaagcaacagctactcttcctgatgtCCTTTCTCATCCCCTCTGTCATTGGACGAAACGATCATGTTAACTTTATTTTCATCCATTTAGATTTCAAGAAAttacaaatgtgttattttaaaatgtttcaaAATAAAGGAAAAGGCAATAAACAGTCCTACTTTTGAAGGGGTTAATTGCTTTAAAATGTGAGTCTTAAATGCATCTTTTGCGAGGGACCATGAAGGCAGTGTATTTTATCTGGGAAAATAGTGTCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTACTTCGTTTTATTTAAATGTGAATTAAAAATGCTTCTTAGTTTATTAAAACCAAGCATGTCTAACTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910780 lncRNA upstream 28476 17571382 ~ 17571653 (+) True G1670088
TU1910777 lncRNA upstream 38447 17557055 ~ 17561682 (+) True G1670086
TU1910776 lncRNA upstream 57661 17542213 ~ 17542468 (+) True G1670085
TU1910312 lncRNA upstream 213209 17328520 ~ 17386920 (+) True G1669683
TU1910788 lncRNA downstream 2115 17607281 ~ 17614739 (+) True LOC118942045
TU1910818 lncRNA downstream 80758 17685924 ~ 17691465 (+) True G1670114
TU1910822 lncRNA downstream 82871 17688037 ~ 17693706 (+) True G1670116
TU1910831 lncRNA downstream 109382 17714548 ~ 17714916 (+) True G1670123
TU1910834 lncRNA downstream 111870 17717036 ~ 17740543 (+) False G1670125
XR_005037941.1 mRNA upstream 12942 17580590 ~ 17587187 (+) True LOC118942043
LOC118942042 mRNA upstream 104388 17484324 ~ 17495741 (+) True LOC118942042
LOC118941996 mRNA upstream 120198 17476413 ~ 17479931 (+) True LOC118941996
LOC110515779 mRNA upstream 127242 17469369 ~ 17472887 (+) True LOC110515779
LOC118942008 mRNA upstream 135148 17461437 ~ 17464981 (+) True LOC118942008
XR_005037943.1 mRNA downstream 5247 17610413 ~ 17615450 (+) False LOC118942045
XR_005037944.1 mRNA downstream 232927 17838093 ~ 17843090 (+) True LOC118942046
XR_005037951.1 mRNA downstream 1489716 19094882 ~ 19185972 (+) False LOC110499153
XM_021576100.2 mRNA downstream 1489716 19094882 ~ 19201695 (+) False LOC110499153
XM_021576096.2 mRNA downstream 1602086 19207252 ~ 19242695 (+) True LOC110499151
TU1910783 other upstream 22867 17572831 ~ 17577262 (+) True G1670091
TU1910465 other upstream 146035 17453487 ~ 17454094 (+) True LOC118941995
TU1909427 other upstream 914034 16658274 ~ 16686095 (+) False LOC110498756
TU1909447 other upstream 1059692 16535724 ~ 16540437 (+) True LOC110498755
TU1908878 other upstream 1443844 16141278 ~ 16156285 (+) True LOC110499058
TU1910833 other downstream 111870 17717036 ~ 17740543 (+) False G1670125
TU1910846 other downstream 111870 17717036 ~ 17779374 (+) False G1670125
TU1910852 other downstream 147128 17752294 ~ 17760812 (+) True G1670129
TU1910848 other downstream 162315 17767481 ~ 17773702 (+) True G1670126
TU1910974 other downstream 446445 18051611 ~ 18121167 (+) False G1670209

Expression Profile