RNA id: XM_036955913.1


Basic Information

Item Value
RNA id XM_036955913.1
length 4799
RNA type mRNA
GC content 0.52
exon number 29
gene id LOC110498770
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18754094 ~ 18887492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGAGCCAATGGAACAGCCGAAGAGGTCGTAATCGTATCGGCAGATTATGGGGCGACAAAAACGAGTGAGGTGGCAAGAGAAGACTGATTTATTTGGCGTAGATCGCGCAGCCCTCTAAACTAGCTCGTAGCAACCAGGACATCATTTTACACCCCTAGGACGTAGCATTCGCATAAGgtacaggttaccttcagatgattCCCGTGACTctgcttgacgcacaatgaagagctgctggcaaaacgcaagaagATAGTGAGCCTGTGATTCGCCATGTCGGCCAAAGCCATCTCAGAGCAGACGGGGAAGGAGTTCCTCTACAAGCACATCTGCACCTCGGTGGCCGTGCAGAACCGCTTCCGCTACGCCAATGTCACCTCGGAGACGGACTGGGACCGCTTGACGCAGGACCACCCATGGCTGCTCACTGAGCGATTGGTGGTGAAGCCAGACCAGCTGATCAAGTGCAGAGGGAAGCTGGGCCTGGTGGGTGTTAACCTAGACCTTGTGGGCGTGCAGGAGTGGCTCAAGCCCCGCCTCATGAGGGAGACCACCGTGGCAAGAGCGAAAGGCATCCTGAAGAACTTTCTCATTGAACCGTTTGTTGCACATACACAgGAGGAGGAGTTCTACATATGCATCTACGCCACCCGAGAGGGCGACCACGTGCTCTTCCACCACGAGGGAGGCGTTGATGTGGGGGACGTGGACGCCAAGGCCCAGAGGCTGCTGGTGGGAGTGGACGACAAGCTGAGCGAGGACTCTGTCAAGGAGCAGCTCTTCATGCATGTCCCAGAAGACAGGAAAGAGGTCCTGGTCAGTTTCGTTGTGGGTCTCTTTAACCTGTATGAGGACCTTTACTTCACTTACCTGGAGATCAACCCACTGGTGGTCAACCAAGATGGCGTGTTTGTCCTCGACATGGCAGCCAAAATTGATGCCACTGCTGACTACATCTGCAAGGCGAAGTGGGGTGACGTGGAGTTCCCCCCACCCTTTGGGAGAGAAGCCTACCCCGAGGAGGCTTACATCGCGGATTTGGATACCAAGAGCGGGGCCAGTCTGAAGCTCACCATCCTGAACCCCCTGGGAAGGATCTGGACAATGGTGGCAGGTGGAGGAGCCTCCGTAGTCTACAGTGACACCATCTGTGACCTGGGTGGAGTGGATGAGCTGGCCAACTACGGGGAGTATTCGGGAGCGCCCAGCGAGCAACAGACCTACGACTACGCCAAGACCATCCTCTCACTTATGACCAGAGAGAAGCACCACGAAGGGAAAGTGCTGATCATCGGAGGAAGCATCGCTAACTTCACAAACGTGGCGGCCACGTTCAAAGGCATCGTCAGGGCTATCAAAGACTACCAGGGACCCCTGAAGGAGAACGGAGTCACCATCTTTGTGCGTCGCGGCGGCCCCAACTACCAGGAGGGCCTAAGAGTGATGGGAGAAGTAGGTAAGACCACCGGTATCCCCATCTATGTTTTCGGCACAGAGACCCACATGACGGCCATTGTCGGCATGGCGCTGGGCAACCAGCCAATCCCCAACCAGCCTCCAGTAGCCGCCCACACAGCCAACTTCCTGCTCAACTCCAGCACCAACTCCGCTACCCCAGCATCTACCAGGACAGCCTCCTTCTCTGAGCCCATAGCAGCTAACGATGCCACGTTAGCTAAGAAGCCCAAAGCGTGCATACCAGCAGCCAAAGCCTCCATGCTGTTTAGCAGAAACACCAAAGCCATCATGTGGGGCATGCAGACGCGGGCGGTGCAAGGCATGCTCGACTTTGACTACGTGTGCTCACGGGACGAGCCCTCTGTGGCGGCCATGGTCTATCCCTTCACCGGGGACCACAAGCAGAAGTTCTACTGGGGCCACAAGGAGATCCTGATTCCTGTTTATAAGAACATGGCCGACGCCATGAAAAAGCACCCCGAAGTGGACGTGCTTATAAGCTTTGCCTCGCTCCGCTCCGCCTTTGACAGCACCATGGAAACCATGCAGTACTCACAGATCCACACCATCGCCATCATAGCTGAGGGCATCCCTGAAGCCCAGACAAGGAAGCTGATCAAGAGGGCAGATGAGAACGGCATCACAATCATCGGCCCAGCCACGGTGGGAGGCATCAAACCCGGCTGCTTCAAGATCGGGAACACGGGCGGAATGCTGGACAACATCTTGGCCTCCAATCTGTACCGGCCAGGCAGCGTGGCCTACGTGTCCCGCTCAGGAGGCATGTCCAACGAGCTCAACAACATCGTCTCCCACGCTACAGATGGCGTCTACGAGGGTGTGGCCATCGGAGGTGACCGGTATCCAGGTTCAACGTTCATGGACCATGTGCTCCGCTACCAGGACACTCCAGGAGTGAAGATGATCGTGATGCTTGGAGAGATCGGAGGCACAGAAGAGTATAAGATCTGTCAAGGCATCAAGGAGGGCAGGATAACCAAGCCGGTGGTGTGCTGGTGTATAGGAACCTGTGCGACCATGTTCTCCTCGGAGGTGCAGTTTGGCCATGCTGGAGCCTGTGCTAATCAGGCCTTTGAAACGGCAGTGGCTAAGAACCAAGCTCTGAGGGATGCAGGAGCCTTTGTTCCCAAGAGCTTTGACGAACTGGGTGACGTCATCAGGACAGTGTATGATGAACTGGTGGCCAATGGAACCATTGTTCCCGCTCAGGAGGTTCCACCCCCAACAGTGCCAATGGACTACTCCTGGGCAAGGGAGCTGGGTCTGATCCGCAAGCCCGCCTCCTTCATGACCAGCATCTGTGACGAGCGTGGCCAGGAGCTCATATACGCAGGCATGCCCATCACAGAGGTGTTCAAGGAAGAGATGGGCCTGGGAGGCGTGCTGGGCCTGCTCTGGTTCCAACGCAGGTTACCGCGCTACGCCTGCCAGTTCATTGAGATGTGCCTGATGGTGACTGCAGACCATGGGCCCGCCGTATCTGGTGCCCACAACACCATAGTCTGTGCCCGTGCCGGCAAGGACCTAATCTCCAGCCTGACATCCGGCCTGCTCACCAttGGGGACCGCTTTGGAGGAGCTTTGGATGCTGCGGCCAAGCAGTTCAGCAAGGCGTTCGACAGCGGCGTGCTGCCGATGGAGTTTGTCAACAAGATGAAGAAGGATGGCAAGCTGATCATGGGTATTGGGCACAGGGTCAAATCGATCAACAACCCCGACATGAGAGTCCAGATCCTGAAGGACTTTGTGAAGGGGCATTTCCCTGCCACTCCGATGCTGGATTACGCTCTGGATGTGGAAAAGATCACCACCTCCAAGAAACCCAACCTGATCCTCAATGTGGACGGCTTCATCGGTGTGGCCTTTGTGGACCTACTTAGGATGTGCGGTGGATTCACACGAGACGAAGCGGACGAGTTTGTGGAGATTGGTGCACTGAACGGGATCTTTGTGCTGGGCAGGAGTATGGGCTTCATCGGTCATTACCTGGACCAGAAGAGGCTAAAACAGGGCCTGTACCGCCACCCATGGGATGACATCTCCTATGTGCTTCCTGAACACATGTCAATGTAACTGATGACAGCGAGTCGGCACCTCTGGATGTCAACACTCGGATATGACGGGAAGCATTTTCACCTTATCACTTCAACAACCTCTGCCTTTGGGCAGGGTAAATCCAGAGGTGGGGGGGATATGGGGGAAGAGGGGAGCGTTAGTTTTATTAGGTCACTAAAGAAAAAGGGAATAATTTACGTTATTTAAGTTATGAGTTCAATCGTTAACAAAAAAAAGGAGCCGAACCAATGCAAGCTGCAGCTGTGGTCACACTAGGTGACTGGGAAAACTAGGTCACCGGTTCACAAATGGGATAGTGGCTTTTTGACCATGCCACCTGGTTGTTTGGTCCATCGCCTACTCGCttatattttattttcatatcTCTTACTAAACTCTCAAACGATTAACAGTTGGTTGAGCTGTATAATATAGGGCTAGCCCTGCTTTAGGCCTCTAGGGTGTGTGCTGTTGAAAGTTAGCATGCTTTCTGGGTGACTTGGTAATGCACATAACATGAACACTGGCTTGCCTATGGAGAAGTAGTCTTGGTCGGTAAACCTGCATCCCTCAATGGAGTGTAAGCCTTGAACGATCCACCGTCATGTACATTACAAAACCAAAGTATTGTGTGAGGTTTTATTTACACATTTAATCTAGTTTCCGACCTTAATCCCCTTCCAAAGTTGTGTAGCCTATTATGGTGTGTACTCTGTGGCTGTTCAAGATAAGGGGGCACGGTTTAACTAGCTGAATGTTAGTGTTGATTTGCcactgccttttttttttttttttaggatccCAATTATCTGTTGCAaaagcaacagctactcttcctgatgtCCTTTCTCATCCCCTCTGTCATTGGACGAAACGATCATGTTAACTTTATTTTCATCCATTTAGATTTCAAGAAAttacaaatgtgttattttaaaatgtttcaaAATAAAGGAAAAGGCAATAAACAGTCCTACTTTTGAAGGGGTTAATTGCTTTAAAATGTGAGTCTTAAACGCATCTTTTGCGAGGGACCATGAAGGCAGTGTATTTTATCTGGGAAAATAGTGTCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTTCTTCGTTTTATTTAAATGTGAATTAAAAATGCTTCTTAGTTTATTAAATATGCCCATAATTGTTATATTGTAGTTTAATAAAACCAAGAATGTCTAACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912348 lncRNA downstream 303 18752762 ~ 18753791 (-) True G1671456
TU1912347 lncRNA downstream 1450 18751940 ~ 18752644 (-) True G1671455
TU1912354 lncRNA downstream 3013 18750544 ~ 18751081 (-) True G1671462
TU1912363 lncRNA downstream 5125 18748104 ~ 18748969 (-) True G1671471
TU1912565 lncRNA downstream 68050 18680248 ~ 18686044 (-) True G1671592
TU1912358 lncRNA upstream 61170 18948662 ~ 18948997 (-) True G1671466
TU1912359 lncRNA upstream 61877 18949369 ~ 18949735 (-) True G1671467
TU1912628 lncRNA upstream 75661 18963153 ~ 18963670 (-) True G1671652
TU1912669 lncRNA upstream 147644 19035136 ~ 19035450 (-) True G1671690
TU1912675 lncRNA upstream 154709 19042201 ~ 19042784 (-) True G1671696
XR_005037950.1 mRNA downstream 369636 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 373836 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 373837 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 373839 18373777 ~ 18380255 (-) False LOC110512504
XM_021576107.2 mRNA upstream 2578 18890070 ~ 18939704 (-) False LOC110499157
XM_036955922.1 mRNA upstream 2578 18890070 ~ 18939704 (-) False LOC110499157
XM_036955923.1 mRNA upstream 2578 18890070 ~ 18939704 (-) False LOC110499157
XM_021576108.2 mRNA upstream 2578 18890070 ~ 18939714 (-) False LOC110499157
XM_036955924.1 mRNA upstream 2578 18890070 ~ 19003867 (-) False LOC110499157
TU1912552 other downstream 111210 18594053 ~ 18642884 (-) False G1671580
TU1912688 other upstream 166638 19054130 ~ 19073187 (-) True LOC110499154
TU1912865 other upstream 439322 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 544647 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 1361967 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1733250 20620742 ~ 20670417 (-) False G1672588

Expression Profile