RNA id: XM_036955920.1


Basic Information

Item Value
RNA id XM_036955920.1
length 3950
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110499157
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18890070 ~ 19003867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgctatgtCACAAGCCTCATGACATGAATGAGCATAGCCATCTCCGTtatagtgtttaaaaaaaaatagaagtTGTCAagtgtcctacttatatcagtataATCGTAGCAACTTTACTTATATTAATTAAGCATTACTTATATTTGATCAAGTAAAAATCgcgtagcaaataagccattcatTTTTTTTGGTTCACCAAATTCGACACGCTTATTGACCATACAAAAAAAACTCGTTACATTGGTGGGCGAAACAATGAAAAAACGtcacctgctggagggagacgATTTTCCGCCGAGTTGGACTTCTCTGTCTTCGTTTAACACAAAGCAGCCGTTCCTGACACTGAAGTTAAGGACGTAGTGAGGCTGGTGTTAGCAAAACTACCATAAATATCGAAACAGCTAAAATATATTGATGATTTCCTTTCACAGAGATCATTTAGCATTTTGTTTTTACAGcgagcttttattttgaaggcggaATCGAAAACAGGAAGTCTACATGCTGCCAGCTGTTACAAAACCAATCGTCAGTTCCACTTTCCCGATAGGTTGGAATGTGTCCTGTCCAATGAGAACAGAAGTGATATTTTTGATTCTCAACGGTTTGGCTACACTGCAAGTCTGCTACGGGCCACTGACAAGAGCAATCTGAACCTCACTGCCAATGATCTCTGGGGTCACAAACATGTTTCTGCATTGAAGCATAAAACACGGAATCTGCCACCTGGCTCTGTGGAGCAAAGAAGTACCCAAGAGACACCAACAGTGTCAATTAGTCCCATTCCACCAATGTCAGGCCTATTGATTCTAAGTTAAGCAACCAATTTGCAAGGAAGATCCCATTCAGTCTGAAAGCAGCCCAGAGATAACCAGTCAGACAGCGCAACTGAATTGTCCAACTATCCACCTTGACTGCCCCGGGCCAAATACAGACGTCCCCTGTATGTCACTCCAAATGGAGACTCTGCCAGACTTTAGTGTTATAAGTGGAGAAACTTCACCTCTTTCAGACAGCGGTCATTCATCTACACCATCACAGCACAGTGGTATCAGTGGGGAGCCCAGAGCCAAGCGCTGGTCCTCTAACCCAATAACCATGCGCACCCATATTTTAAAACCCAGCCATCTGGGATTCAATGGGCAGAAGTCCTGCTCCCCAATTTTGAGTCCCATACGTGCTTCAAAGATCTTCAGGATTCAAGATGAAACTTTACCGAACTGCACCGGAGAAAGTTTATTTGAGGACACTATAGACCCCTGCTTTTTGCCTATGGTGGAGCCCACTGTTGGCAGCTCTACAATGGCTTTGTCACACACACCTCCGGAGACTTGCATTTCTATGAAAGAGAGTTTCACTAAACCAGAGGATGCAAATAAAGATTTGCAAAGGGGCTCTAATTTTAGTCTCAGTTTGCAGGGAAGTCCAACAGCTCTCAGGGAGACTATATCAACCAGTAGCTGTTCCAGAGCTTCCCTGGAGGGCACACATGACATATCTGCATTCGAGGGCAGCAAAGAAAGTCTGCATTCCTTAGAACATAAGGTACAGAACCTGACGACCGAGGTTGCTGTGTCTGTTGTGGTGCAAAAATCAAGTgttgcctcttcctgtctctcaaaTGCTAATGTCACATACATAATTTGCCCTGATAGTGAGATGTCTGCGTCCTATACGGTGCCATTGTCCTCGTCAACATCTGGTTCCTTGTGTGATGACAAGAGGGTGAACAACGTCACCTTTGAACTTATGGTTGAACCAACACTGGAGCCCAAAACTGGGACCAACGAGCCCAATGTCACGACTACTGCGCTGGAGGCTGTGGAGATTAGTAGGCCAATGAAAGACACTTTTGAAGCTTGCCGTCCTATGAAGTTCAATGCAATCACTGAGCAAGAGACTTATGATGGTACCAAACAACCTCTAAATAATACTTTTCAAACTAACCCTCATGTAAATGCAACCACTGAGCCAGTGACCATTGTTGGCAATGCACGCCCCCCTTTTCAAACTGACCACGAACCAACAAAAAGTGCTGAAGTTGATGTCCGTGAACATATGGTACAGTCCCAACCAGGCCCGTCCGGGAGAGATGGTGACCCCTTCACCTTGGATGATACTCTGGCGTTGGGTCCCAACTTTCTGCTGACATCCACTCCCATGGTTACATCTACGGCTTTAAGGAAACCAAAGAGACACTCAGATGTGCGGAAAAAGTTATCTTCGGGCATCCTGCCAAAACCAGCTAAaccacctgctgtctctaaactTGCCACTTATAGGAAGATGTTCCTTCAGCCCCAGGGTGTCACCTCCAAACCCAAATCACTGCTACCCCCACTGAGATCTGTGTCCCAGCTTCCATCATGGACTCGCCCACCAAAGACCAAGACAGTCCCCGTGGCTTCAGCCCCCTCGGAGCCATCCTCTGCCATACCCAGCAGAAGATGCAAAACACGAGCAGATGCCTTGGGACATGCTGCGGTCACTGTTTCTCAGCAGGCCTCGACAGATGATACTTCCAGTTGTAGGCGTAGCACAATTGCAGAATCCAAGCTGATGAGCACTGGCCTGAGGAAACCTCAATCCTATGGCACTCAGAGATCCATAGCTAGCCTCAGGCATCCTGCAGTAAGAGCTATGGCAACCTGCTCCACTGAAAACCCCAGCCTCTCTTCAGGTTTAAATGGAAGGAGTCTACAAGCACCCAACCAAGGCCAGAAGCACTTGCCAACCAGCAGTGATGCTTTTCCTGTAGCAAAGAGGAAAAAAATAGGGTGTGCAAACTATGTGCTACTTCAGCAAGAACTGGAGACGTGTCGTCAAGAAAATGAGAGACTGCGAGCAGGGTGTGCAAACTATGTGCTACTTCAGCAAGAACTGGAGACGTGTCGTCAAGAAAATGAGAGACTGCGAGCAGGGAGGCTGAGGGCTTCAAAGATCAAGGAAATGCTTTCTACGTCAAGAAGGATTATTCTGAGGCATTTAACTACTACACAAAGGCCATTGATGCATGTCCTAAAAACGCCAGTTACTATGGAAACCGGGCGGCCACTCTCATGATGCTGTGCCGCTTCCGAGAGGCCCTGGTGGACTCCCAACGGGCCGTGCGGCTGGACGACTGTTTCATGAAGGGCCATCTGCGAGAGGGCAAGTGTCACTTGTCTCTGGGCAACGCCATGGCAGCCAGCCGCTGCTTTCAGAAGGTCCTGGAACTGGAGCCCAGCAACAGCCAGGCGCAGCAGGAGCACAAAAATGCCACAGCAGTACTGGAGTACGAACGAATGGCAGAACTGGACTTCGAAAAGAGGGATTTCAGAAAGGTGGTGTATTCTATGGACAAGGCCCTGGGATTGGCGTCCACCTGCCATCGCTTCAAAATCCTCAAGGCTGAGTGTTTGGCCCTACTGGGTCGCTACCTAGAAGCCCAGTCTGTGGCCAGGTACAAACCAATCAGGCACTAAAGTGGGGCAGAAAGGAGTGGAAGTTAGGAGGACATTgttattagttaaataaagtccacttgTGTGCAATCTGTGTCACATGacctcagtgtatatatacacctgttctgaaaggtcccAGAATCTGCagcaccactaagcaagcggcaccatgaagaccaaggagctctccaaatagGTCAAGCACAAAGTTGTggtgaagtacagatcagggttgggttataaacatTTTTTATCAGAAatgttgaacatcccacagagcaccattttaaatccattattaaaacatggaaataatatggcaccacaacaaacctgccaagagagggccgctcaccaaaactcatggacgaggcaaggagggcattcatCAGAAAAGCAACAGACCAAAGAAaaccctgaaagagctgcaaagctccatatggaagaaagtactctggtcatttgagactaaaatttagcattttccttgatggtcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912348 lncRNA downstream 160991 18752762 ~ 18753791 (-) True G1671456
TU1912347 lncRNA downstream 162138 18751940 ~ 18752644 (-) True G1671455
TU1912354 lncRNA downstream 163701 18750544 ~ 18751081 (-) True G1671462
TU1912363 lncRNA downstream 165813 18748104 ~ 18748969 (-) True G1671471
TU1912565 lncRNA downstream 228738 18680248 ~ 18686044 (-) True G1671592
TU1912669 lncRNA upstream 31297 19035136 ~ 19035450 (-) True G1671690
TU1912675 lncRNA upstream 38362 19042201 ~ 19042784 (-) True G1671696
TU1912676 lncRNA upstream 38968 19042807 ~ 19043093 (-) True G1671697
TU1912677 lncRNA upstream 39614 19043453 ~ 19043694 (-) True G1671698
TU1912679 lncRNA upstream 41426 19045265 ~ 19045480 (-) True G1671700
XM_036955912.1 mRNA downstream 27290 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA downstream 27290 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA downstream 27290 18754094 ~ 18887492 (-) True LOC110498770
XM_036955915.1 mRNA downstream 27576 18754094 ~ 18887206 (-) False LOC110498770
XM_036955914.1 mRNA downstream 35443 18754094 ~ 18879339 (-) False LOC110498770
XM_021576104.2 mRNA upstream 50287 19054126 ~ 19073212 (-) False LOC110499154
XM_021576105.2 mRNA upstream 50287 19054126 ~ 19095333 (-) False LOC110499154
XM_036955925.1 mRNA upstream 259152 19262991 ~ 19277103 (-) False LOC110499148
XM_021576092.2 mRNA upstream 259152 19262991 ~ 19277123 (-) False LOC110499148
XM_021576093.2 mRNA upstream 259152 19262991 ~ 19277123 (-) True LOC110499148
TU1912552 other downstream 271898 18594053 ~ 18642884 (-) False G1671580
TU1912688 other upstream 50291 19054130 ~ 19073187 (-) True LOC110499154
TU1912865 other upstream 322975 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 428300 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 1245620 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1616903 20620742 ~ 20670417 (-) False G1672588

Expression Profile