RNA id: XM_021576091.2


Basic Information

Item Value
RNA id XM_021576091.2
length 3116
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110499147
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19277271 ~ 19294949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTATGAAAAATCTTATACCGAGTAcacgttgtgttgctaccattggTTGCCACTTGCAGGTAGTTGGCGTGGCGGTAACTGCTTGTAGTCAACAGAGGCTTCAGCTGCTTGAGCCATGAGTGAGTTTCGGATACACCATGATGTCAATGAGCTGCTCAGTCTGCTTCATGTGCGAGGAGGTGATGGGGCAGAAGTGTTTATTGATCTACTGCAGAAGAACAGGACACCTTACATCACCACAACAGTGTCTGCACACAGTGCAAAGGTCAAAATAGCAGAGTATTCAAAGACGCCAGAGGACTTCCTAAGGAAATATGATGAGCTCAAGTCAAAAAATGTCCGCAACCTGGACCCACTGGTCTACCTCCTATCAAAGCTTAGTGAGGATAAAGAGATCCTCCAATGTCTGCAACAGAATGCCAAAGAAAGGTCTGAAGTGTCTGCTAATGCGACAACAAGTACAACCTTTGCTATCCCTCCAACCAGCACTAAGATGTCAATGCAGGAACTTGAAGAGCTGCGCAAGAAGCTGGGGAATGTCACTGCCAGCTCCAATGTGCCCCAGTCTGCTGAAATCACACGAAAGATGCTGAGGGACAGACACAACAAAAAGAACCCCACTCAGCCCAACCCGGTGTTTCCCAATTGGGTGTATGACCGTCCTGCTCTGAATGGGGACTTCATCACCGGTGCCACAGCAGCAGGAGACCCAGCAGTGGCCATTGGTACAATGCCCCTGCCAGCCCAGGAGCAGGCGTTGGTGGATGATTTGCTCTTTGTGCTGGTCGGTGTGGACGGCAGAGACATCACGGCCCAGCCTGTCCTCGGGAGGCAGAATCGCTCCTTCATCGTTGACCCAACCCTTGACATGTCCATCAAGGAGCTGGTCAATAGGGTACTACCAGTTGCCTCATACTACTCTACTATAGCACGCTTCACTGAGGAGAAGTCGTCTTTTGAGTACGGCCAGGTGAACCACGCCCTGACGGCAGCCATGAGGACCCTGATGAAGGAGTATCTGATCCTGGTGACCCAGCTAGAGCACCTCCACAGGCAGGGCATGCTCTCCCTGCAGAAGCTCTGGTTCTACATCCAGCCCACCATGAGGACCATGGAGATCCTAGCCTTCATTGCCTCCTCGGTGGACAAAGGAGACTGCATGGGTGGGTCGACGTTGAGCCTCCTTCACGATCGTACCTTCAACTACACTGGAGACAGTCAGGCCCAGGAACTCTGCCTCTACCTCACGAAAGCAGCTAGTGTCCCTTACTTTGAGATACTGGAGAAATGGATCTATAGAGGCATCATCAAGGACCCTTACAGTGAATTCATGGTTGAAGAGCACGAGCTACAGAAAGAGAAGATCCAGGAGGACTACAACGACAAGTATTGGGATCAGCGGTACACAATCGTACAGCACAGAATTCCATCCTTTCTTCAGAAAATGGCAGACAAAATTTTGAGTACAGGTAAATATCTCAATGTGGTGAGAGAGTGTGGCCGGGACGTGACTTGTCCGGATGCTAAAGAGGTCCTTTACACTCTCAAGGAGAGAGCCTACGTGGAGCAGATAGAAAAATCCTACTACTACGCCAGTAAGGTCCTCCTTGACTTCCTGATGGAGGAGAAGGAGCTGGTCGCACGCCTtagGTCAATCAAGCACTACTTCTTGATGGACAAGGGAGATTTCTTTGTCCATTTCATGGACCTGACGGAAGAGGAGCTCAAAAAGCCAGTTGATGACATTGTCCCTCCCAGACTGGAGGCCTTGCTAGAGCTGGCTCTGAGGATGAGTACTGCTAACACAGACCCATTCAAAGATGACCTGAAGATTGACCTAATGCCTCATGACGTGATCACCCAGCTGCTGCGGGTGCTGGCCATTGAGACCAAGCAGGAGAAGGCCATCATCAATGCCGACCCCACCGAGGTGGCCCTCAGCGGCCTGGAGGCCTTCTCCTTCGACTACATCGTCAAGTGGCCGCTGTCGCTCATTATCAACAGgaAAGCGCTGACAAGATACCAAATGCTGTTCCGGCACATTTTTTACTGCAAACATGTCGAGAGGCTGTTGTGCAACGTGTGGATCAGCAACAAAACAGCCAAGCAGCACGCCTTGCACAGAGCCAAGTGgtttgCAACAGCGTTTGCCTTGAGACAGCGCATGCTGAACTTTGTACAGAACATCCAGTACTACATGATGTTTGAAGTCATGGAGCCCACCTGGCATATCATGGAGAAGAACTTGAAATCTGCCTCCAACATAGACGACGTGCTGTGTCATCACATCAGCTTCCTGGACAACTGCCTGAAGGACTGCATGCTGACCAACCCAGAGCTGCTTAAGATCTTTTCCAAGCTCATGTCCGTGTGTGTCATGTTCACCAACTGCATGCAGCGCTTCACCCGGAGCATGAAGCTGGACCGGGAGTTGAACCGGCTGTCTCTGGAGCATGGCACCATGGAGGGTCCTCCCACCCAGAGCGAACGCACCGAGGAGCAAGAGAAGAAGAGACTCACCTCCAAGTTTCTAGCGGAGCACGTGGACACCCTGCAGTCATACTCATGCTTCGAAGCCACCGTCAGCAAGTTTGACAGCAACTTCAGTACACTGCTCCTGGACCTGCTGGACAAGCTCAGCGTCTACAGCACCAACGACTGTGAGCACAGCATGATAAACATCATCTACAGGTTGGATTTCAACGGGTTCTACACAGAGCGCCTTGAGAGGATGGCTATAGAGAGAAGTCAGAAGGCTGCTGCATAGCACTGTTTTATGTGAGTGTTCATGATGGTCACCCACTCTATAAGTATTTATTTCTCCTACTCATGCCCATATCAAAAACCAACTTCAAAGACGACATTCCTCTCCACATCAAACATGAAGCTGTCAAACATACAGCTGTTTAGTGTTTTATTCAAGAAACTATCACCATAGATTTGACTATATGGTGTTTTCCCCTTTATGGGCATAGGAATAAATAATCATGAACTGTATGAATTTCTCTCAGAAGAATTTAAAGAAAACCTGGACCTCTATATGGGTAACTTGTTTTTTACCTTGTGAAAATTGTTTTTGTGTTTTattgttcaataaaaaaaatatgaaatttc

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16569 TUBGCP2, GCP2; gamma-tubulin complex component 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912825 lncRNA downstream 20419 19256463 ~ 19256852 (-) True G1671831
TU1912824 lncRNA downstream 21798 19255051 ~ 19255473 (-) True G1671830
TU1912823 lncRNA downstream 22523 19254122 ~ 19254748 (-) True G1671829
TU1912760 lncRNA downstream 24261 19241068 ~ 19253010 (-) True G1671776
TU1912747 lncRNA downstream 125475 19151446 ~ 19151796 (-) True G1671767
TU1912843 lncRNA upstream 5009 19299958 ~ 19304097 (-) False G1671848
TU1912844 lncRNA upstream 5009 19299958 ~ 19304097 (-) True G1671848
TU1912883 lncRNA upstream 38455 19333404 ~ 19334931 (-) True G1671877
TU1912857 lncRNA upstream 89041 19383990 ~ 19397036 (-) False G1671856
TU1912856 lncRNA upstream 89154 19384103 ~ 19397036 (-) True G1671856
XM_021576092.2 mRNA downstream 148 19262991 ~ 19277123 (-) False LOC110499148
XM_021576093.2 mRNA downstream 148 19262991 ~ 19277123 (-) True LOC110499148
XM_036955925.1 mRNA downstream 168 19262991 ~ 19277103 (-) False LOC110499148
XM_021576105.2 mRNA downstream 181938 19054126 ~ 19095333 (-) False LOC110499154
XM_021576104.2 mRNA downstream 204059 19054126 ~ 19073212 (-) False LOC110499154
XR_002469923.2 mRNA upstream 9166 19304115 ~ 19305599 (-) True LOC110499150
XR_005037952.1 mRNA upstream 10701 19305650 ~ 19308476 (-) False LOC110499146
XR_002469922.2 mRNA upstream 10701 19305650 ~ 19312301 (-) True LOC110499146
XM_021576085.2 mRNA upstream 66667 19361616 ~ 19376231 (-) False LOC110499144
XM_036955929.1 mRNA upstream 66667 19361616 ~ 19376232 (-) True LOC110499144
TU1912688 other downstream 204084 19054130 ~ 19073187 (-) True LOC110499154
TU1912550 other downstream 634387 18630713 ~ 18642884 (-) False G1671580
TU1912549 other downstream 634387 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 645184 18631507 ~ 18632087 (-) True G1671584
TU1912551 other downstream 677155 18594260 ~ 18600116 (-) False G1671580
TU1912865 other upstream 31865 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 137190 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 954510 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1325793 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 1434326 20729275 ~ 20730072 (-) True G1672649

Expression Profile