RNA id: XM_021576055.2


Basic Information

Item Value
RNA id XM_021576055.2
length 2074
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110499129
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19728772 ~ 19731361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGCTAATGTATTACTATAACAGATTACTGGGATACATGTCTGAGATACCTGTTGGTAAAATAGTTTAGCTTACTTTTATGTCCGAGAATGTTCAAATAAATTAAGAATGAAAAAATCCTGCATATCGTCCTCACTGACAGTTATCTCCACTGCCAGTAGATGACGCTGTCTGCCTACTTGGATTTTAGGGCGCAATGGGGAGGCACCATTGATTTGAGCATAACGACCATCATTTCGTCATCATTTGTAACCATAGAGCATGAATTACCTCTTGAAGTCATCAGTGAGAATTTACGACTGGTCAACAAAGGCACGTGATTCCCGAGCGCTCTCCCATATTTGGCCGCATACCTGGCAAAGTTCAGTAGGCTTCATTGCTATAATTCATGATTACATCATAAATCGTGAAGCAGAGGATTATAGCGACAAAGATCTACAAATCGAGTCTTTAAAAACAACCAAATGAGCTCTTACTTTGTTAACTCGTTTTCAGGGCGCTATCCGAATGGCTCCGACTATCAGTTATTAAATTATGGGACTAACGGCGCTGTGAACGGTACGTTTAGGGATTCTGGCACCATGAACTCCGGGTCTTTCGGCTGCAACTACAATGGCATGGACCTAACCGTAAATCGCACCAACACTGGTAGCCACTTCGGGGCTGTTGGGGATGATACCCGTGGTTTCCCGACCACGGGCACGGACGCCCGGTACAGACAGCCGACCTGCTCGCTCTCGTCTCCACATCCACACCCCCTGCCTTGCGGCACCCCCGAGTCTTTGGAAATAAAaagcccctctcctccatctgacCGGACCACGACCTCGGGCGGCAATAATAATCTCAACAAAGGCAACAACAGTCATTTCACAGAGATAGAGGATACCGCCGTTGTCTCTGAGTCCGAGGAAGGTGCACACACAAGCAGCACGGCTCCCCGGGCGCAACAACCACAACAGGAGTCCAACGCAACCTCCACGACGGCAAACGATTGCCAAACGCCACAAATATTCCCTTGGATGCGGAAACTGCACATTAACCATGAAATGGCTGGACCTGATGGGAAAAGGGCCCGAACAGCGTACACCCGCTACCAGACGCTAGAACTGGAGAAAGAATTTCACTTCAATAGATACCTAACccggaggaggagaatagagataGCCCACACTTTGTGCCTCACGGAACGACAAATAAAAATATGGTTCCAGAATCGAAGGATGAAATGGAAGAAGGACAATAAACTGAAAAGTATGAGTCTGGTTACAGGAGGTAGCGCGTTCCATAACTGAGCTCGAACTGCAAGTGATGATAAGGGGGAATCCGGAGTGTAAAACTAAAGTGCAGCGCCTTTCGGCATGTTGTGATTTTAGGCGGAAAGATGTGCTGTGGTCTTAAACAGGCGTTTAGTTTTCCATTGTGTTATGGTAACCTGTAGAATTTATCTTTGGAAATAGGGGGGGGAAAAAGAAAAAAAGACTCATTGTCGAAGGGTTTAAAGCCATGTGCTCTGTTTTATCTCTTGAAGGTTGTCATGTTTCACGTGAGCTCTTATATTGTGTAAACCGTCTAACAGGTGTAACGTGTACAGTAGACTATGTTTCCACACCATATGCTGCTCTTCATTGAATGTAAACCTGTAGATGATGGGATCATTCAAAGCGCTTTAGTGTACGTTTTAATGCTGTATTTATGCTTGATTATCGTGGCCAGAGCCTTAGGTTTTCAAGGAGGTTTTAAAATACAAGTAAATATGTTATGTAGACTATACCAAATGCACAAATATATCAATTGTAATTGTTTAGAACTAAGTACTTATTATGTTGCATACTAATGTGAATGTAGGCTATTCAACATTTCAATGTGATCCATTAGTAGTGGACAAGGAGGGAGTGGTATTCTGTGGATTAGCCTGTAAGGCAACAGTGATGGTAAACATTTTGCCAATTAAGCTTTTTGTATTTGTATGTGAATCTATAGAGCTGGAAATAAAGTTTCTCTCCATCGCTTGATATATTTGAAGCAAAGTATTGCAATTAATTCACCTCTTCATTAAACATATTACAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1911615 lncRNA upstream 7700 19720785 ~ 19721072 (+) True G1670783
TU1911612 lncRNA upstream 10767 19716034 ~ 19718005 (+) True LOC110499131
TU1911611 lncRNA upstream 11281 19715817 ~ 19717491 (+) False LOC110499131
TU1911610 lncRNA upstream 16459 19712097 ~ 19712313 (+) True G1670780
TU1911593 lncRNA upstream 57762 19670675 ~ 19671010 (+) True G1670765
TU1911636 lncRNA downstream 14072 19745433 ~ 19745654 (+) True G1670801
TU1911745 lncRNA downstream 147039 19878400 ~ 19878689 (+) True G1670894
TU1911755 lncRNA downstream 175445 19906806 ~ 19907730 (+) True G1670904
TU1912118 lncRNA downstream 781659 20513020 ~ 20513264 (+) True G1671244
TU1912121 lncRNA downstream 785953 20517314 ~ 20517532 (+) True G1671247
XM_021576057.2 mRNA upstream 148 19726589 ~ 19728624 (+) True LOC110499130
XR_002469916.2 mRNA upstream 10736 19712507 ~ 19718036 (+) False LOC110499131
XR_002469918.2 mRNA upstream 10736 19712507 ~ 19718036 (+) False LOC110499131
XR_002469920.2 mRNA upstream 10736 19712507 ~ 19718036 (+) False LOC110499131
XR_002469921.2 mRNA upstream 10736 19712507 ~ 19718036 (+) False LOC110499131
LOC110498767 mRNA downstream 27527 19758888 ~ 19761562 (+) True LOC110498767
XM_036955941.1 mRNA downstream 66389 19797750 ~ 19842089 (+) True LOC110498765
XM_021576051.2 mRNA downstream 147612 19878973 ~ 19886391 (+) False LOC110499126
XM_021576052.2 mRNA downstream 147612 19878973 ~ 19886391 (+) True LOC110499126
LOC110498764 mRNA downstream 169802 19901163 ~ 19903369 (+) True LOC110498764
TU1911253 other upstream 603536 19095044 ~ 19125236 (+) False LOC110499153
TU1910974 other upstream 1607605 18051611 ~ 18121167 (+) False G1670209
TU1910976 other upstream 1618549 18051611 ~ 18110223 (+) False G1670209
TU1910972 other upstream 1633354 18075100 ~ 18095418 (+) False G1670209
TU1910848 other upstream 1955070 17767481 ~ 17773702 (+) True G1670126
TU1911957 other downstream 496434 20227795 ~ 20228168 (+) True G1671091
TU1914009 other downstream 1358042 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 1409164 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 1565011 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 1585437 21316798 ~ 21317412 (+) True G1673063

Expression Profile