RNA id: XM_036955941.1


Basic Information

Item Value
RNA id XM_036955941.1
length 3091
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110498765
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19797750 ~ 19842089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAGGGACTTTGAATAAGCTGATGTGACATATGATATAACAACTGAAGAACACCATTCAAAGGAAGCTTTTAGTCACCTCATGCTCCGCCCCATTTTTGTAAATACGGCTTGTTATATCATATGTCACATCAGCTTATTCAAAGTCCCTGGCTGTATGCACACACGGAAATGGTTTTGGTTTGAGAATAGTAGGGTACAGGTGCTGTGTGAGTGTATGAATGTAGTGTGTGAGTATTCACAGGCTTTCATTTCAAGCAGTGAGCTGTTACAGTGTGACGGGTCAGGTCTACACAGATACTATAACCTTTCACCAAAGTATAGCTCTGATTTACCGTATCAAAATTAAAATTGCCTGAAAATTCTTCTGGAACTTTGAGAGAAGGATGGGGACAGTCTCTGATGACATTAGAAGGCTTTTGGAGGACTGTGAGCTCTTTGTATCAGATATCCTACAGGACGAGAACCTCAGTAAACATGCCAGAGAAACACGGGACGTCCTACTTAATAACTTCAGGGTGGTCCACTCCAGAAATCCTCAGGAGTTTCCTTTCAGATCTGAGCCCAGACAAGAGGACAGTTCAGATGACAACCAGAGCTCAAGTCTGGGCCGCTCGGCCCCCTCAGACGACCTGTCTGTGGCCTCTGACTACCAGGACGAGGGCTCTCCTGAGTACTTTGAGGAGATCCAATTGGTGGCAGCCCAGGATCTCAGTAACATCTTGAAACAAGGCTACCTGGAAAAGAAACGACGGGATCACAGCTTCTTCAGCTTAGAATGGCAAAAGCGATGGTGTGTCCTCAATAACACAATATTCTACTACTTTGGGAGCGACAAGGacaagcaGCAGAAGGGCTCCTTCTATATCAATGGCTACAGCGCAGAGCTGGTGGCCAACCTACGTAAAGACTCCAAGAAGAATGCCTGCTTTGAGCTGAGTGCCCCTGACCGACGCTCCTTCCAGTTCACTGCTAGCAGTCCGCGAGAGGCCAGGGAATGGGTGGATCAGATCAACTTTGTCCTGAAAGATTTGAGTTCCAGCTTCATCCCCTTTGATGacgatgaggaagaggaagaggaagaggaggaggagacctaTGATGACATTGAGGGGGTGACCGGGGCGGCCAGCCCTCCCCCTCGTCCCACCCCCGCCCCCGTCCTGCCCCAGCAGGCCAAAGCCTCTCTCAGTAGCCAGGAGGAATGGAGGCCCAAGCAGGGGGGGCaagaggaagcagaggaggatGATATCTACGAGGTGCTCCCAGACGATGACTTTCCAGAACCAATTGAGGAGATAAGTGAGAAGAGCACAAAACCAGTCTGGTCCATGGACTATGCCAACTACTACCAGGGCTTGTGGGACTGTGAGGCAGACGAGCCTGATGAGCTGGCCTTCCAGAGAGGTGACCTCATCTATATCGTCAGTAAGgagTATAACATCCATGGCTGGTGGGTCGGAGAGCTAAATGGTACCATCGGTATCGTCCCTAAAGACTTCCTCCACCCTGCCTACATCCTCTGAGCTCCAAGAAGTACTGGATCACTCTCTTATTGTTAAGATTATAAAATAATTTAATGGAGTAATGTAGCGTAACAGGTCTCCTGACACCCACTGAGATAGCCATTGAGAGAGCAGGAGATGTGTATATTCGCAGCGCTTGGCCGGCCATTTAGGACATCTGGTGGCTGAAAGTAGAACTGCGTGGGAAATTGAATCAGCATTTATAgacaggttggttgtttagcaacaaaaccgacgtgtgcgcaactatggggcaaaataACTGGCTTAGGTGGTTGACagcatgtaaactatatttagtctctaaatgtttattgaaaatgtaaatatatttgcacaatgagcacttgttgtctctcaaatacatagttacagttgttggttagctagctaattcaTTTTTAGCCATATTAGCGTAGACGTGTCATGAGTCAAAACAAGaaatggtatcaataacaagatgcaatgagctgaaacgagccacctacgattccccacatgacAGCTTCTtctcattgttgctagctatctgaccatcCAGAATCATTACACCACATGGCCTTCTGCATCATCGACATGCGCGCATCGTTGTTTCTTGACATTGTCAGCTAACCCGTCTTTATAGATATTGATATGCTCAGTAATGCTTAATTATAGCATCATTGACATCATCATTGGATTGGGAAAAATTATTCCAACTATACGCCATAGAAAAAATATCACACTGCACAATACTACAGGAACTGTATGTTACACGTTCCGCTCTGATGATCGTTTATCTTTGTATTATGCCTTACTTCTTTCTACAGTTGAGTGATGTGACTGACTGCGTTCCCAGTCCCAAACACTGAACACTTCGAGATTGATGACAAACTGAGATATTTTATTATTTCGTAATATAATGTAATGCAATGCTGTTAGTGTAAGGTTTTTGTAGAATGTTTTTGTAAAGATTGACTTAATTTCCATGCATAAATGACATTACCTTGGTCCTTCAGAGGCCTTTGGTCTACACATTGAATTATGGATCATGTGAAAAGGTTTCCTCTATCCAATTGTTTCCAGTGTGCAGTATTTGTACCCATGTGTGTGAATGGGAATGGCCAGATATTTATGAAACATTATGCCCTTGTGACTAAAATAAGAAATCCTCACCTCTGAGTGAACTGGGGGCTATTTGACATTACAAAGCATACTGACTTGTGCCTTCAACAGCCTTGTGTCTGAAGGAAGGCTACAGTGCGTGTTATCTTGATGCTGACATTAAGATATATAGGCAACAAGGGTTCAGGCTTGCTCCACTATCTTGTTTCAATTAAGAGTTTGAAATTGGAATACCTGATAATTAACAATATCAAGAAAAATACTATATTTTGATTGTTGAGCTTGTACAAATATATTTTCTTAGCCTAGTGGTTGTGTTTTTCTTATGGTTTGGGCCTACTGGCCTTTTATGTCCGAGTGAATTGATTGAGTGCTTAtgctttaacatcatgctgtttgtgactgctgtctttctaTACGCTTTTTGTGTTTTAAAAGAAGTGCACTCTCCTACACATCAa

Function

GO: NA

KEGG:

id description
K17699 SKAP1, SKAP55; src kinase associated phosphoprotein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1911636 lncRNA upstream 52096 19745433 ~ 19745654 (+) True G1670801
TU1911619 lncRNA upstream 66928 19729616 ~ 19730822 (+) True LOC110499129
TU1911615 lncRNA upstream 76678 19720785 ~ 19721072 (+) True G1670783
TU1911612 lncRNA upstream 79745 19716034 ~ 19718005 (+) True LOC110499131
TU1911611 lncRNA upstream 80259 19715817 ~ 19717491 (+) False LOC110499131
TU1911745 lncRNA downstream 36311 19878400 ~ 19878689 (+) True G1670894
TU1911755 lncRNA downstream 64717 19906806 ~ 19907730 (+) True G1670904
TU1912118 lncRNA downstream 670931 20513020 ~ 20513264 (+) True G1671244
TU1912121 lncRNA downstream 675225 20517314 ~ 20517532 (+) True G1671247
TU1912125 lncRNA downstream 679492 20521581 ~ 20521797 (+) True G1671251
LOC110498767 mRNA upstream 36188 19758888 ~ 19761562 (+) True LOC110498767
XM_021576055.2 mRNA upstream 66389 19728772 ~ 19731361 (+) False LOC110499129
XM_021576057.2 mRNA upstream 69126 19726589 ~ 19728624 (+) True LOC110499130
XR_002469918.2 mRNA upstream 79714 19712507 ~ 19718036 (+) False LOC110499131
XM_021576051.2 mRNA downstream 36884 19878973 ~ 19886391 (+) False LOC110499126
XM_021576052.2 mRNA downstream 36884 19878973 ~ 19886391 (+) True LOC110499126
LOC110498764 mRNA downstream 59074 19901163 ~ 19903369 (+) True LOC110498764
LOC110498763 mRNA downstream 72375 19914464 ~ 19915261 (+) True LOC110498763
XM_021576046.2 mRNA downstream 73883 19915972 ~ 19938321 (+) True LOC110499123
TU1911253 other upstream 672514 19095044 ~ 19125236 (+) False LOC110499153
TU1910974 other upstream 1676583 18051611 ~ 18121167 (+) False G1670209
TU1910976 other upstream 1687527 18051611 ~ 18110223 (+) False G1670209
TU1910972 other upstream 1702332 18075100 ~ 18095418 (+) False G1670209
TU1910848 other upstream 2024048 17767481 ~ 17773702 (+) True G1670126
TU1911957 other downstream 385706 20227795 ~ 20228168 (+) True G1671091
TU1914009 other downstream 1247314 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 1298436 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 1454283 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 1474709 21316798 ~ 21317412 (+) True G1673063

Expression Profile