RNA id: XM_021576054.2


Basic Information

Item Value
RNA id XM_021576054.2
length 5600
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110499128
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19849403 ~ 19865429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATGTTACCCGGAAGTACTTCGTTATTTTTGCCTGCTTCACACAAAGATAACAAAAATAGAGTTAGTTGATGCTGCGCCGAGTTCCACAGATCTTTGCATGATGTCTCCTGTGCAGCCTACATAAGGATGATGAAGAATCACGAAGAAGATGAATTTGTTGCAGTGCGGGTCCAAGACCCCCGGGTTCAGAATGAAGGCTCTTGGAACTCGTACGTGGACTTCAAGATATTCCTTCACACCAACAGCAAGTCCTTCACTGCCAAGACGTCCTGTGTGCGCCGGCGCTACAGTGAGTTTGTCTGGCTCAAGAAGAGGATGCAGAAAAACACTGGCTTGGTacctgtcccagacctgcccAGCAAgtccttcttctccttcagtgGTGAGGACTtcctggagaagaggaggaaaggccTGCAGTGCTTCCTGGACAAAGTGTGCAGCATGACAGTGTGTCTGTCAGACAGCCAGCTCCACCTCTTCCTGCAAACCCAACTGCCGGTTGGTCACATCCTAGACTGTGTGCAGGGCCACACCCCCTACACTGTGACAGAGGCCATCCTCACCTATGCCTCGTCCAATCAGGGCTGGGTTCAGGAAGAGGACTTGACCCAGGAGCCTAGTCTCACTCCAGTTCCTTATGAGTCCATGGAGAGCCCTGCCCCTCATCTACCTACCCTGCAATGTCAAGAGCCCCTCAGCCCTGTGAACCTCGCCTCCAGTGAGCCAGAGGGCCTACGGACCGAGAAGTTCCTAGCTGACGCCGATGACATAGACACTGTGGAGACCCTTTCCCCAGAGGTCACCCAGGAGGACCGCAATGTAGTCCAGGCAGACCCCATCCTGGAGATACACAGCCCAGTGGAGACTATCTTTAAGTGGGGCAGCCATGAAGAATCTACTCCAGAGAGGCTCGACCATGAGGCGATGATCCACCACCAAGGTGATTGTCAACTGCAGACACCTGTGGAAGTGCATTGTGAAAAGGACACAGGCTTGGAGGAGGAGTGTGTAGTGGAGGTGACGACTGAGAGGGTCATTTGTGAGGAGAGCCATGCTGACATAACTACAGAGACAATCCCTCCCAAACAGAGTAACCTAGACCCAGATAGCCACGAGGAACTGATCCACCAAGGGGAACGTAAACAGACACCTGAGGAAGAGGCCACAGGCCTGGAGAAGGAGTATGTATCAGAAAAGGACAATACTGACACGACTACAGAGACGATCCCTCCCAAACAGCGTAGCCCAGAGCTAGATATCCACGAGGAAACTCCTGGAGATGCAGATGGAGTTCGAGATGGAGATGGAGTTCTAGAGGACCTTAGCCTTGCGGAGGAAGCTCAAGAAAGCATCAGTCATGAGAAGACAACCTCGGAAGGGGACATCAACAAAGACACAGTAACAGCCATTGAGCTGGACAGCCAAGGGCACATGGATGAGATTAACTCCCACATAGAGATCAGCCTAGAGGAAGAGTGTCATGAGATCACATCAGAAGAGGTGGAACGTGTTGATGACTCAACTCAAAGGATAGAAAGTGGAGATGAGACAACCCAGAAGAAGAAGGCTCCCTTGGACATTCAACAAGTAGATGATCAGCTGGACACAACCCAAGAGGttgagattgatgaggaaattaaTGGAAAGGATGGGGAGAGTCTTGGGGATGGGGCAACAACATTTGATGGGAGTAGCCATAAGGAGAGCGACAACAAGGATTTTGCCAATAACGACAATGCAATACAAGAGACGAATGGCTACATGGAGACAGCTCCCGAGAAGAAAAATCGCCAAACAGACTGCACAGAGGCAGAAAAGGCCTTCAACAACTCAGACTCTGTAATTCTCTAAACTAACCGAGGTCCCTCACATGATGAAATCACACCTGAGGTATCCAATGCTCAGGGGACCAATGATGTCAAATTCAGAGAGGACAGGGATATTTTGTACATGGTCAACAGTTGCTCAGCAAAAACCCTAGAGAATGAATCTTCAGAGCTAGTGGGTGATGGAGTTGAGCTAAAGGACATGAGAATCCAAGAAAGCAGTCATCTGGAGTCTGAGGGCCACTGTACAGAGCAGAACATCTCATTAGCCCAGGAGGGTAATACTGAGGCCTCAGAAGTGAGCCAGGAATGGGAGGCCCATGGGTTCACTGTTGCTACAAACCAGACTGTGAGCCCAGAGATGGAGCCCTAGATATTAGGCTGCTGCATGCACTCTGAACCTGAACAATGGATAGTGGGATGTCTTCTGCCAAAGACAGAACCAGTCTCTCACTCACCCTGCACGCCTATTCTCACACTCCAGCTGAGCTCTGCTTCGCTTGCGTTGATGAACTTCCTCTGTTGGGCAGCAGAGAGTGCTCAAAGTCACAGTAATACTTGAGTCTATGGGTGAGAACTTCCCCAAGCTGACAAGTCCAGTGTATCACGCTTCGTATTTGGTCATTGACTTTCCTCAAGTCTGTCACTTTCATGTGTTCCTCTGTATACTCTGTGAACTTGTGCCTATAAGGGAATTAGTCCATTTAACTCAACCGGCTGTGGTGCCCCAATGGCATTAATGTGACAATTATTTTATTACCCATATGCCGTAACACTGTATGCTTGACTATGAGGGGCAAACGTGTCCCAACCTGCCCCAAGTCCCTCTGATGCATGTGCCCATCTGAACACCTGCCTTGATGAAGCAAAATGCCCTTCAACTGAACAGCAGCAAAACCGAGGCCCTGCTTGTTGGCACCCACTGTCAGGTCCAGCACTtaccaataacacacctcaccataGCAGGACAGAACacgcctctctccccctcagtttCCAGTCTGGGTGTTAAAGCTTGATTCCTCCCTGACCTTTGACAGCCACGTCAAACAACCGCGTAAAGCGCCATTCCATCTCCTCACGGCTGAACTACCTCGACACACTCTTCATCGGGAACCCAGGCAGGAGTCTCCAGAAGCTCCAGTACATCCTGAACAGAGCTGCCAGGATCCTAATGAGAGTGCGGAAACGCCATCACATCAACCCCATCGCGGCATCTCTCTGCACTGGCTCCCCATCTCATTACAGATTGAATTCAAAACCCTCCTGCGGACATTCCCGTGTGTTCTTGGCAATGCCCCTCCTTTATCTAAAAATAACTACTCTCCCTCCATAACCCCACCTGCACCCTTAGGACAAGCGACTCCACGCCCCCAGGACCAAGCTCAGCTTCTTGGGAGATCAGCCTTTCAGCTCGAccgcccccagcctctggaatgcCCTCCCGGACCACCTGAAAGGCATCACAGACTCTGGGCTCCTTTAAAATGGGCCTAAAGACCTTTCTCTTTAGGAAGGCTTttaaatccaatgttatttgtcacatgcttcgttaacaacaagtgtagactgacagtgaaattcttacttttccaacaatgcaaagTTAGATAAAGAAAGCTGGGCTTGTCCTTGTCCCTTGTAGCGTCAACTGTGTTCTTTGTGTCAGTTGCCTGGTCTAGTTGTCCCAAAAAACgttatttgtttttacatttattttatgcaCTTAGATTATTCTGTATAATGAAAAGTGCTTTACAAatgtaatttattattattatgtgatcCATAACTGTCGCAGGGAAGTCGTGATTACGAATTTGGAGTCCGTGAAAAGTTGTCTTGCAATCAACTTTGACTGTGTTTTATTAATAACTTCCAGCAAAAAGTGTCATCCTGCATGCATTCCCTTTGCTGATGTGGGCGATTTCTTGGTTCAGCTTGAATAAACAGGGATGAgggtcgttccacctcaaaaagcacaagtaAGAGGATTTTGACACCCACCTTCTCAGATTGTGTTGTAAtagtttctgtagttagaaacagataagattagcgttcctgaaacattattttgttgaaatataatttaatATCTGAGaaattaaaggcccaatgcagtcaCGTTTATCTCGGTATCAAATATTTTCTGGGtagcaattaagtaccttactgtgattgttttaagagccatttctcaagcaagaatttggaGAGTGGTCCCAGTGGGGAgcggaaaactgaaaactagctgttattggcagagatgtttggaactctttcttattggtctattaacttaaTTACCGCCTGGTGACGTCACCAAGCAGACCTAAACTCCATCCCAGGCAGAAATTTCAGGtcgtcttttcaaacagcttacACTAAAAGGCCATTATCATTTTCCGTGTtcttccaacctcatagtgtatTATTCTAACCTCATATATTTGACTGCACTGGGActctaattgattgcacccaaattggccattttaatttattGGATTTATATAATTGTCAATAAATGTAGTACCTAACATCCAATTTGGACCATAATTCCTCCTAACAATGAGTAAGACACGAGGAATCCAATAAAATTATCAAAAGCCTCCCACGGACCTAGCCTTGCAACGTCGCCAGATCCCGCGAGCTTACATTAAACGTTGTATGGATATGTATGTTCACTGTAAGCTCGCGGGATCAGGTCCATACTGCTTGTCAGACATAACTGatactggttgttggggtgggagGTGTGTGGGGGTTCCATTGGTGGCTTTTTACCACTTTAATGGATTCTTCATGTCTTGCATAATGGGAGGAAGAAGTTTGGTTCAAATTGGATGTTGTACTATATTTGTTGAATATGATGTGAATCCTAAAAATGTTAAGGGCCAATTTAGGTGCCAACAATTATCTTACATTGTCAGATCAAATTAAATGTCAACGAAATAATGTTGAAGTAATGCTAATCTTATCTATTTCTAATGTTCTGAAATAGTTTCTGtaaatctgagatggtgggtgtcatggcttgccaTGTTAGCCAATTGAGCCGAAGGCTGCATGGACACTAGCTTTACTAAGCTCTCTGTCCTCGGGGTTAGTTACAGTATAGGTATAGTAAACGGTACTCAACACTGGTATCTTTGTAAATTGTCAACATGTTACACCAATGCAGTCAGAGCGAACATATGCTTTTAGTGTCTTCCCAGGGATgcttcattattttatttcaagACGACCTGTTTGTATTTTTCAACACTGAGAAAAGGGACCATTTATTATTTATGTTTTGTGTGGGTAGACAACTACATTTAGATATAATTGGTCATGATACTTGTAGTGCATTTGAAATTATGACAGGATCACTGTTCTACTGGGTATGTGAAACATGATGTGGGGTGGACTACTAGAGGAAGCATAGAGTGCAGATTTAACTATAGCCAACCTTCTGTTAGACCACATTGTCTGGTAACATTTCTGGTATCATGCTTCCCTATATTCTGTCATCAGGCTATGTTTGTTCCCATATTCTGCATTTTAACAGGTGCATTAGTTATTTTAAGTGGTAGATGGTTCCCGGACACATGGTTTTAGATTTTCAATGTTATGTATTTTAGACACATGGATTTACATGGGCAATATTATACCAATCATCTAAAATAGTCAACAACAAACTAGGAATGCACCTATtgacaatgttttatttttaatatcatTTTAACTGGAAATAAAATGATAGTCCCCCCCACACCTGGA

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913091 lncRNA downstream 106450 19742569 ~ 19742953 (-) True G1672063
TU1913066 lncRNA downstream 137641 19711504 ~ 19711762 (-) True G1672041
TU1913042 lncRNA downstream 165125 19683951 ~ 19684278 (-) True G1672023
TU1913025 lncRNA downstream 200173 19649021 ~ 19649230 (-) True G1672006
TU1913023 lncRNA downstream 201336 19647840 ~ 19648067 (-) True G1672004
TU1913157 lncRNA upstream 19079 19884508 ~ 19968165 (-) True G1672115
TU1913161 lncRNA upstream 39768 19905197 ~ 19970513 (-) True G1672119
TU1913218 lncRNA upstream 72720 19938149 ~ 19939700 (-) True G1672171
TU1913222 lncRNA upstream 78544 19943973 ~ 20041257 (-) True G1672173
TU1913343 lncRNA upstream 249112 20114541 ~ 20129012 (-) True G1672294
XR_005037955.1 mRNA downstream 2907 19843106 ~ 19846496 (-) True LOC118942049
LOC110499132 mRNA downstream 142936 19696235 ~ 19706467 (-) True LOC110499132
XM_021576061.2 mRNA downstream 179364 19662557 ~ 19670039 (-) False LOC110499136
XM_021576063.2 mRNA downstream 179364 19662557 ~ 19670039 (-) True LOC110499136
XM_036955940.1 mRNA downstream 208895 19614542 ~ 19640508 (-) True LOC110499139
XM_036955944.1 mRNA upstream 21124 19886553 ~ 19897067 (-) False LOC110499125
XM_036955943.1 mRNA upstream 21124 19886553 ~ 19897343 (-) False LOC110499125
XM_021576050.2 mRNA upstream 21124 19886553 ~ 19897956 (-) False LOC110499125
XM_021576048.2 mRNA upstream 21124 19886553 ~ 19897957 (-) False LOC110499125
XM_021576049.2 mRNA upstream 21124 19886553 ~ 19898320 (-) True LOC110499125
TU1912901 other downstream 414362 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 442472 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 776216 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1206519 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 1217316 18631507 ~ 18632087 (-) True G1671584
TU1913435 other upstream 384030 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 755313 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 863846 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1723600 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1970904 21836333 ~ 21844793 (-) True G1673740

Expression Profile