RNA id: XM_036955944.1


Basic Information

Item Value
RNA id XM_036955944.1
length 5127
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110499125
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19886553 ~ 19898320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATGTGGAATATGAGTTTGTTTTTGCATTCACTGGTAGTGCATATGCTAGGTTTATGGTTGTGAGTTTAAAGTTTAGTTTGATTTGGCTATTCATGTTGGTTATCATTGAATTTGGTCATCTTAAATCGTTTGTGGCTGACTGCCCATTGTACACGTTTGAGGAAAAGCCTGTTTGTTTCAACATCTGAGGCCATACTCACATTTCATCTTGTCCGAACAATGTTTGATGCATTCAGCTTCTGTTATGTCATgtATGGGAGGACTTACTGATGGGGAAGACCAAAGCCTGACCTAGAACACGGTTTACCCTTTGACTGATATTGGGCGCACATACAAGACCACAGAAACCCTCTCTATTCACATTTTAAGCTAACTCTGCAAAAAGAGAAAGTCCCTCTTCTGTCATATCTGCAATTGTCATACTTTCATTGTTTATCCCAGTCTTTATCTCAGTATTAACTATTGCGCAACGCTAGTTTGTCCCCTGttaattttttacttttttaCTTCACTTTTTGTTCCTTTGTAAAGCAATGCTTTACCTGAAAAAGTACTTCACAGAGGGCCTGATTCAGTTCACCATCCTCCTGAGTCTCATTGGGGTGCGGGTGGACCTGGACACCTACCTGAGCAATCAGCTGCCCCCACTGCGGGAGATCATCCTAGGTCCTAGCTCGGCCTACACCCAGACGCAGTTCCACAACCTCCGCAACACGCTGGACGGGTATGGCATCCATCCCAAGAGTGTGGACCTTGACCAGTTCTTTACCACCCGCCGGCTGCTGAACCAGGTGCGCCAGCTGGATCGCCTGTCAGTGCCCAGTCCAGAGCTGAGCACGTGGCTGGTGCACCGTGACCCTGAGACTGTGGTGTCCGCCGCCAGCCAATCCAGCCCCAGCATCACCCTGGACAATGGAGCCGGCCTGGAGGACGTGAACACCTCCGAAACCCCGACCatgaggggtggtggaggagcgCCTGAGTCCACCTACAACCCAAGTGGAGAGGACAGCAACCTGGGAGCCGTGGCCCCTGAGGACAGCCAGGAGCAGCGCAACAGGGATGGCAATGATGACCTCACCAAAGAGGACATTGATTTGATTGACATCCTGTGGCGACAGGACATCGACCTTGGCGCGGGACGGGAAGTGTTCAACTATAGCAGTCGCCAGAAGGAGAGTGAGGCGGAAAAGCCCAGcccagaggaggaggaaagagcagaggcacaggagagatggaggaatggagtGAACCTTCAAGAGGCTCAGCCTGTGGATGGAGAGACCGGGGAGAGCATACCAGAGCAGATCCTAGGCCTTGGCTCTCAGACCTCACTGTCCCTGCAGGAATGCCTAAGGCTGCTGGAGGCCACCTTCCCTTTCGGAGAAGAATCTCCTGAGTTTCCAGCCCCTGTAGTCACAGCTGAGTCTGCGGTGGCCAATGAAGAAGCTCCATCCACATCTCTGGGCCTACCACTGACTCCCCCGTTGCCCCAGTTGGACCTGGAGCAGCAGTGGCAAGACATCATGGCTATCATGGAACTACAGGAAATGGAGGTTAATAACACCTCAGACAACTCCTTCCTCAGCACTACTTCCAACAGTACCAATACCAGTGGCAGCACAAGTGAGTCCGGCTCAGTTGGAAGCTTTGGACTTACTCGTTCCTCCACCCTTATTCACCAAGATGTCAGCCTTCGCCAGGCCTCCCTCCCTAGCTGCAGCCAGGACTTTCCAACACTTTTCAATCCAGAGATGGATGCCACTAGCACCCCACGGACCCCCTTGCTTAGAATGTCCTCTAGCAACTCCTCCAACGTCAACTCTACATTCGGAGCCACCAACCTGACTGGACTCTTTCTCCCACCGCCTCTGAACAGCACCAACAACATCACTTGCACTCCAGTGTTGCCTGATCCCTTCAGCACTATGCTGGAGGTGTCTATGCTGGATGAGATCAGTCTGCTGGACCTGGCAATGGAGGAGGGCTTCAACCAGGCCCAGGCCTCTCAGCTGGAGGATGAACTCGACTCGGACTCCGGCCTCTCCCTAGACTCCAGTCACAGCCCGGTCTCACCGAGCAGCTCTGAGACCTCCTGCTCCTCCGccgcttcctcctcctccacctctgccACCTTCTCAGAGGAAGGGGCTGTGGGATACAGCACTGACTCGGAGTCAGCTGCCGTGGAACCAGAAGAAGGTGCTGTGGGGGGCTACCAGCCCGAGTTCAACAAGCTCTGCCGCATGAGCTACCAGGACCCCTCCCAGTTCCATGGGCTCCCTCAGCTCGACAACATCAACCACAATCACACCTACAATTTACCACTGTCTTCATCGTTCGATGAACACCTAGAGCTACCGATTCCCACTGGCAAGAAAATGGGCCGTGAGAAGCAGTCAAAGCTTAAGCCACAACAGGATTTCCTGGACAAACAGTCGAGTCGCGATGAGCGACGGGCTCGGGCCATGAAGATCCCCTTCTCAAACGAGAAGATCATAAATCTGCCTGTGGAGGAGTTCAACGAGCTTCTGTCCAAGCACCACCTGAGCGAGGCCCAACTGGCCCTCGTCCGCGACATTCGTAGACGTGGCAAGAACAAGATGGCGGCCCAGAACTGCCGCAAGCGCAAGCTGGATACCATCATCAACCTGGAGCAAGGGGTGCACGACCTGCGCCGTGACAAGGCGCGGCTGCTGAAGGAGAAGATGGAGTTTATTCGCTCCATCCGCCAGATGAAGCAGAAAGTGCAAAGCCTCTACCAGGAGGTGTTCACCCAGCTTCGGGATGAGGAGGGCCAGCCCTACCTCCCCAGCGAGTACTCGCTCCAGTACAGCGCCGACGGCAGCGTCCTGATCATGCCCCGCACCATGACAGATCAGCAAACCCGTAAGCCCGAAAAGAAACAAAAGGACAAAAAGAAGTGAGGAAGCTGTTGCCTTTTCTTTCATTTAGCTAAAATCACTAAGAAAGATTTCTGCAGATGCAAGAGAGGTCTTTTTTCCTTTGAGAAGATTCTTGTGAGGAGAAACTGCATTGTTGACTACTTTTCCTGCATTAGgttttttccttttcttttgtgGTTCCTGTGTTTTCTCTGGGAAACGACTTTGAAGCAGAAGTTCTTAATTTGAGTACTGAATTTTCATTGTTTGGGTGGAAAAAAAGGAACAAACAAGGAAAAGAAGGGGTTGAAAGAGTTCTCTGGATCTTTGGCACCAGGCCATGTTATTACTTCATGTTATGAAGTGAAGGGAGTCGTATCAAGTGAAGTCAGAGTTAAAGGAAAAACTAACATTAAGTCAACGTGAAACTGGGTGTAAATTCCGGTCCATTGTTAGTCAGCTTTGAACGGATTGTTAAACCGATTTTCTTGCTTGGGCTTTGGAGTGATTGGTGGAGTGACTGTTTCTGGAGTAAGTAGAAGTTGCACATGTAGAAGAAAGCTAAGACAGGGCCTGGAGATGTCAAAGGTTAAGATACCAGTGGGGTAAAGCAAGTCCATCATCCAGGATACCATTATCTTAACAATACCGCCGATACTAACCAAATGTGTTGTGCACTTCACTTGTACTCTAAGCAAAAGTCTAGCTAGTCTGACTGCACTCATTCAAAATGTGTTTATTACAAATACCACCGGTTTTGACTGGCCATTGACTTTGAGTCCCTTTGCTGTAGAACTAGGACACTGGAACACAAAAGAGGCTGGGAGAGTAGTCTTGGGCTTGCCACGATGGTGGAGCATGACAAGTATAGGAGATGGAACGCTGAGGAAGAAGGCACACGCTGCGTTACAAATGTATCAGCTTCTGTATATCTATATAGCTCTGTAATTTGTCCTCCTAAGGCTTGGCTGTATGCATCGTGCCGTGTCTCTGGCTATCCGTCTGCCGCAGGTTTAAGGATGAGCTCTGCTGGTAGTCTTTTCGTTTTCCACACATCCTCATACGGTCCAGAATAAGCTAGGTTATAAGTCTAGCTTCATCATGCTGGGTCTACTCCCTGCCCTTATTGCATCACACACTGTTGGTTGTGCCTGTAACCACATTGCAGGAATTTTACAGGCCAGGGAATATTGATTTTGATAGTCGTCTTTGCAGGAAGTATTGTATGAACTGCAACCCTGTGGAAGTGTCCCGTTTTATTACAAATCAAATGCACCCATCTTTACTATCATTGGTTTGTTTCTTGTAAAGTGACAGATGAGCCGTTCGGCTGTCGAGTAATTGCAGTGGTAGCCTTTGAAAGAGTTGTCATTCTATTTGATAGTTACCTGAAGCAATGGACAAGACAGTTGATGAATAACCTAGTTGTCGGCTTTAATAGTCTACGGTCATACGTGTCATTTAGAATTGTAAACCAATTGAATCGAACTGAGTGAACTGACAAGGATAATATGTGAAGTGAGAGCCTTGTTTTCGAATGCCTTTGTTTCACAAGCACATTTCTAAATTTGAGGGTTTTGAGAACAAAGGGTTATTGGACTGTTATCAGAACATTAGAAGTGCTATTGCCTGAGCGTATGTGTTTTTTGGGGTCAAATTGTGTTTTAGCATGTACCCCGAATCAAAAAAAGACTAGGCCATTTATTAATGCAACAGGAATAGCTGTTTAAAGAGAATGAGTACATTTGTGAACCCCAGATCTACAGTGAAGGATGGGAAAGAACTAAGTCGCTGCACTGATGAGTGTCCTATGTTCTTCATCCACATAACTTTCATAGTTCTTGTCATCATTACCCTGTGAGGGGAgccaaagtaaaaaataatttttCATGCAGTACTAATACTTTCGCAGGGGGGAAAAAGTTGCTGTCTCAATTTAAATGAAGTTGTTTGTTGTCGCACTTCAGAAAACATTTGATATTTAAGACGTGCAAACGTTCACCTGCATTGCAACACAATGCAAAGCCCATTTAAGTTATTACTTCTTAGTGCTGCTTTTGTTAATGGTCTTGTTTGTTCAGTAAATATTTTCTCCTTTTGTCATTCTTTTCTGTAGTTTGTCTGCATTTTGCACAGCCCCTGCTTTGGTTATGTATTTTCTTTTGGTTTACTTTTAAATAATTCCTGGCAATCTGGGATTGTTATTTTATTGATTAATAAAGTGTTTATTTTCATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913091 lncRNA downstream 143600 19742569 ~ 19742953 (-) True G1672063
TU1913066 lncRNA downstream 174791 19711504 ~ 19711762 (-) True G1672041
TU1913042 lncRNA downstream 202275 19683951 ~ 19684278 (-) True G1672023
TU1913025 lncRNA downstream 237323 19649021 ~ 19649230 (-) True G1672006
TU1913023 lncRNA downstream 238486 19647840 ~ 19648067 (-) True G1672004
TU1913161 lncRNA upstream 8130 19905197 ~ 19970513 (-) True G1672119
TU1913218 lncRNA upstream 41082 19938149 ~ 19939700 (-) True G1672171
TU1913222 lncRNA upstream 46906 19943973 ~ 20041257 (-) True G1672173
TU1913343 lncRNA upstream 217474 20114541 ~ 20129012 (-) True G1672294
TU1913416 lncRNA upstream 330137 20227204 ~ 20230281 (-) True G1672363
XM_021576054.2 mRNA downstream 21124 19849403 ~ 19865429 (-) True LOC110499128
XM_021576053.2 mRNA downstream 21237 19849403 ~ 19865316 (-) False LOC110499128
XR_005037955.1 mRNA downstream 40057 19843106 ~ 19846496 (-) True LOC118942049
LOC110499132 mRNA downstream 180086 19696235 ~ 19706467 (-) True LOC110499132
XM_021576061.2 mRNA downstream 216514 19662557 ~ 19670039 (-) False LOC110499136
XM_021576047.2 mRNA upstream 10268 19907335 ~ 19913870 (-) True LOC110499124
XM_036955946.1 mRNA upstream 44399 19941466 ~ 19961356 (-) False LOC110499122
XM_021576045.2 mRNA upstream 44638 19941705 ~ 19960739 (-) True LOC110499122
XM_021576042.2 mRNA upstream 116006 20013073 ~ 20126587 (-) True LOC110499121
trnaa-ugc-145 mRNA upstream 269569 20166636 ~ 20166705 (-) True trnaa-ugc-145
TU1912901 other downstream 451512 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 479622 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 813366 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1243669 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 1254466 18631507 ~ 18632087 (-) True G1671584
TU1913435 other upstream 352392 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 723675 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 832208 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1691962 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1939266 21836333 ~ 21844793 (-) True G1673740

Expression Profile