Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021576047.2 |
| length | 1447 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 7 |
| gene id | LOC110499124 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 19907335 ~ 19913870 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0042823 | pyridoxal phosphate biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0008615 | pyridoxine biosynthetic process | biological_process |
| GO:0010181 | FMN binding | molecular_function |
| GO:0004733 | pyridoxamine-phosphate oxidase activity | molecular_function |
| id | description |
|---|---|
| K00275 | pdxH, PNPO; pyridoxamine 5'-phosphate oxidase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1913091 | lncRNA | downstream | 164382 | 19742569 ~ 19742953 (-) | True | G1672063 |
| TU1913066 | lncRNA | downstream | 195573 | 19711504 ~ 19711762 (-) | True | G1672041 |
| TU1913042 | lncRNA | downstream | 223057 | 19683951 ~ 19684278 (-) | True | G1672023 |
| TU1913025 | lncRNA | downstream | 258105 | 19649021 ~ 19649230 (-) | True | G1672006 |
| TU1913023 | lncRNA | downstream | 259268 | 19647840 ~ 19648067 (-) | True | G1672004 |
| TU1913218 | lncRNA | upstream | 24279 | 19938149 ~ 19939700 (-) | True | G1672171 |
| TU1913222 | lncRNA | upstream | 30103 | 19943973 ~ 20041257 (-) | True | G1672173 |
| TU1913343 | lncRNA | upstream | 200671 | 20114541 ~ 20129012 (-) | True | G1672294 |
| TU1913416 | lncRNA | upstream | 313334 | 20227204 ~ 20230281 (-) | True | G1672363 |
| TU1913465 | lncRNA | upstream | 373549 | 20287419 ~ 20334652 (-) | True | G1672410 |
| XM_021576049.2 | mRNA | downstream | 9015 | 19886553 ~ 19898320 (-) | True | LOC110499125 |
| XM_021576048.2 | mRNA | downstream | 9378 | 19886553 ~ 19897957 (-) | False | LOC110499125 |
| XM_021576050.2 | mRNA | downstream | 9379 | 19886553 ~ 19897956 (-) | False | LOC110499125 |
| XM_036955943.1 | mRNA | downstream | 9992 | 19886553 ~ 19897343 (-) | False | LOC110499125 |
| XM_036955944.1 | mRNA | downstream | 10268 | 19886553 ~ 19897067 (-) | False | LOC110499125 |
| XM_036955946.1 | mRNA | upstream | 27596 | 19941466 ~ 19961356 (-) | False | LOC110499122 |
| XM_021576045.2 | mRNA | upstream | 27835 | 19941705 ~ 19960739 (-) | True | LOC110499122 |
| XM_021576042.2 | mRNA | upstream | 99203 | 20013073 ~ 20126587 (-) | True | LOC110499121 |
| trnaa-ugc-145 | mRNA | upstream | 252766 | 20166636 ~ 20166705 (-) | True | trnaa-ugc-145 |
| XM_021576037.2 | mRNA | upstream | 383674 | 20297544 ~ 20308719 (-) | False | LOC110499118 |
| TU1912901 | other | downstream | 472294 | 19432139 ~ 19435041 (-) | True | G1671895 |
| TU1912865 | other | downstream | 500404 | 19326814 ~ 19406931 (-) | True | G1671859 |
| TU1912688 | other | downstream | 834148 | 19054130 ~ 19073187 (-) | True | LOC110499154 |
| TU1912549 | other | downstream | 1264451 | 18638381 ~ 18642884 (-) | True | G1671580 |
| TU1912557 | other | downstream | 1275248 | 18631507 ~ 18632087 (-) | True | G1671584 |
| TU1913435 | other | upstream | 335589 | 20249459 ~ 20251165 (-) | True | G1672381 |
| TU1913660 | other | upstream | 706872 | 20620742 ~ 20670417 (-) | False | G1672588 |
| TU1913728 | other | upstream | 815405 | 20729275 ~ 20730072 (-) | True | G1672649 |
| TU1914775 | other | upstream | 1675159 | 21589029 ~ 21596186 (-) | True | phf5a |
| TU1914957 | other | upstream | 1922463 | 21836333 ~ 21844793 (-) | True | G1673740 |
