RNA id: XM_021576045.2


Basic Information

Item Value
RNA id XM_021576045.2
length 1842
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC110499122
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19941466 ~ 19961356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGCGGCATAGGTCCCAATCTTTATCTCAGTATGTTGAATGGGACTGATACGCAAACTTTCGGAAAAGACACCGAAATCAACAATCACCTTCAACGCAGCAAGGATTTAGCGGAGTTCAAAATGGGAATTCAGGACACCAGGTTATATTACCAAGACGCAATTCAAAACGGACAAGACGGGTTGGTACTGCCATACCACGCAGACCAAACTGTGGCAGGTTTCGGAGCACAACCCGGGAGGTTTTACTCACCAACTCCCCTCAATAGCTGCCACTTCAGCAGTGTCAGGTCGCCAACTAGAAACGGAATGGGACAGACTTATTTACCGACGGGAGGCGACGGTTTCTCGACAACTAGCAAAGAAGTTTACCCTGCCTCTCCAGAGAGTTATTCCGCACCCTTTCAACACGGGTACCCTCGCACTCCGCTCTACCCATTACCTGGGCTACAGGTGTGCGGGAAGACGCAGGCTCTCCTCAACAACTATCCTCTGTGGGCGAAGTTCCACAAATACCAAACGGAAATGATCATAACGAAACAGGGACGGAGGATGTTCCCCTTCCTGAGTTTCAACATCAGCGTTCTGGACCCGTCAGCCCACTACAATGTGTATGTGGACGTGGTCCTGGCTGACCAGCACCACTGGAGGTACCAGGGAGGCAAGTGGGTCCAGTGTGGCAAAGCAGAGGGCAACATGCCAGGGAACAGGATGTATATGCACCCAGACTCTCCCAACACAGGGGCTCACTGGATGAGGCAGGAGGTGTCGTTTGGCAAGCTCAAGCTCACCAATAACAAGGGCAGCTCCAACAACGTTGCACAGATGATCGTGCTGCAGTCACTCCATAAGTACCAGCCGCGGCTGCACATCATTGAGGTGAAGGACGATGGTTCTGAGGACCCCTTCCTCACCACCAAGGCCCAGACTTTCATCTTTCCGGAGAACCAATTCATCGCTGTCACAGCCTATCAAAATGCAGACATCACTCAGCTGAAAATAGACCATAACCCCTTTGCTAAAGGTTTCCGGGACAGTTATGACACGCTGTATGCACCGCCTGACACGGACCGCCTCACCCCGTCCCCCACCGAGGGCCAGCAGTTTTTGCCGGGGACCTGCTACACACAGGGGTACCTGACGGACCAGTACATGAACCCGCTGCCCCAGAGCCGATTCTACAGCCGGGAGCACATGGCTGCCATGGGCCAGCAGTCCAAAGACCCCTCAGCCAGCCCCCACAGCCGCTGGTACCTTTCCCCCCAGCAGAGTGTCACCTCCAACCGGCTGGACTTCAACACCTACGAGAGTGACTTTGCTAGTAACAGCTTCTACAAGCCCTTTCCCCTGCAGACGTCGGCCCACCACGCGCTGGGCTACTACGGGGACAGCCCCTTCGCCTCTGCCAGCGTATCCGTCTCGGGAGCCTCCTCAGCAGCCTGGACCACCAGCCGACCCTCCCCTCAGTACCTTAACCACCCCCACCCCAGTAAAGCCGGCCCCAGTCTAGGCTGGTTCAGGCCTGTGTCCTCTTCCAACTCCTCCTCTTCAGGTCCCGCCAGGCTCCACCCCCCATCCCTGCTAGAGCCGCTCCGCCCCCCACCCCCACTACAGGACAAGCCCaaggaggtggggggagaggacCCCTGGCTGGAACCCCCCTCGGTCAAATCAGTGGACTCGGCCGACTCCGGCCTGTtcgagagtggggtagagagcaAGAAACCGCGAGTGTCGCCCTACGCCTCTAGCACGGAGAACTCGCCACCCACCCGCAGTGCGGAGGTCTGTGAAAAGGACAGCAGTAGTGACGCCGGCTACTACGGCTTTTACACCCACTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913218 lncRNA downstream 2005 19938149 ~ 19939700 (-) True G1672171
TU1913091 lncRNA downstream 198752 19742569 ~ 19742953 (-) True G1672063
TU1913066 lncRNA downstream 229943 19711504 ~ 19711762 (-) True G1672041
TU1913042 lncRNA downstream 257427 19683951 ~ 19684278 (-) True G1672023
TU1913025 lncRNA downstream 292475 19649021 ~ 19649230 (-) True G1672006
TU1913343 lncRNA upstream 153802 20114541 ~ 20129012 (-) True G1672294
TU1913416 lncRNA upstream 266465 20227204 ~ 20230281 (-) True G1672363
TU1913465 lncRNA upstream 326680 20287419 ~ 20334652 (-) True G1672410
TU1913476 lncRNA upstream 336805 20297544 ~ 20300668 (-) True LOC110499118
TU1913477 lncRNA upstream 352528 20313267 ~ 20314911 (-) True G1672414
XM_021576047.2 mRNA downstream 27835 19907335 ~ 19913870 (-) True LOC110499124
XM_021576049.2 mRNA downstream 43385 19886553 ~ 19898320 (-) True LOC110499125
XM_021576048.2 mRNA downstream 43748 19886553 ~ 19897957 (-) False LOC110499125
XM_021576050.2 mRNA downstream 43749 19886553 ~ 19897956 (-) False LOC110499125
XM_036955943.1 mRNA downstream 44362 19886553 ~ 19897343 (-) False LOC110499125
XM_021576042.2 mRNA upstream 52334 20013073 ~ 20126587 (-) True LOC110499121
trnaa-ugc-145 mRNA upstream 205897 20166636 ~ 20166705 (-) True trnaa-ugc-145
XM_021576037.2 mRNA upstream 336805 20297544 ~ 20308719 (-) False LOC110499118
XM_021576039.2 mRNA upstream 336805 20297544 ~ 20308719 (-) False LOC110499118
XM_036955948.1 mRNA upstream 336805 20297544 ~ 20308719 (-) False LOC110499118
TU1912901 other downstream 506664 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 534774 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 868518 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1298821 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 1309618 18631507 ~ 18632087 (-) True G1671584
TU1913435 other upstream 288720 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 660003 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 768536 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1628290 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1875594 21836333 ~ 21844793 (-) True G1673740

Expression Profile