RNA id: XM_021576042.2


Basic Information

Item Value
RNA id XM_021576042.2
length 4823
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110499121
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20013073 ~ 20126587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTATCTAGTATTAGTGTACCAAGTTTGATACTTGTATCATAAAGTCGAACGATCTCAGCATACGCTGGACTACATGTGCTGCTGCTGCGTGTTGGAGCCATATGAAGCTCCTATTGCCGCGACAAGAATCCACCCCAATCGAGAACAAAGTGTTTGATTTCCAGATAGAGCAGCAGTTACCGAACTGcggaaggagagaacagaagaaCACTGGCTACTATCAACGGACATTGGGACTCGCCGCAACCTTGCGCTTTTTTGGGTGTACTGCCCCTCTTGAGCAATGGCATCTCTTGATCGATCATAGAGATGTGTGAGGATGGGGTCGCCTTTTTTATTACCATGTATTATCAGTAGATTAGATGTATCATACAGTGATACTAGAGTATTCCATAGCCTCTGATGTGAGTGCATGGAGACACATAGGCAGACAAGGTTGGGAATGTGAAAGAAGCAGCGCTCTCCGTGTATACGCGTGATCCTACAGATTGCACAGAAAAAAACACAATATTTCCCATGCATGTTTTTTGTTAGTAGACTTCGTAACTCATGGATCAAATATTGATTAATCATCAGCTGCTAATGAACACACCATAAATTAGCAGTGTTCTTGAACAAAGCTGATGCATCTTAAAGGAGACGCGCGTGCTTTGACAACATCACCACCTCAAATGGATGGAGTTATCGTCTGATCCTGGCCACAGAAATCGCCCAACTTCAAGCGCCACGTAGGTTGAGGCTCTGAGCAATGGAATCTCTATTCGGTGGTGAGCTGAGGCTACTGGGAGGTGGCGAGGGCTTGAAGGAGGACAGCTGTGGCGACGTGGGCTGGTCCTCCTCAACCCTCCCTGATGAAATGTACTCCGTCTCCCACTTCGCCCTCATCACCGCCTACCAGGACATCAAGACACGGCTCgcgggcctggagagagagaacagtggcatCAAGAGGAAGCTCAAGATCTACGAGATCAAGttccctATGATCAGTGAGTTTGGGGAGGACAGGAACTCCTACTGCAGCTTTGAGTCCAAGGAGACAACTCTACTGCAGTCAGAGAACGGCAACCTGCAGCAGAAAGTCAGCACCCTCACCCACGAGctccaGAAGAGGAAAGAGCTCCAGGAGCAGCTGGAGGATGTGATCCAGGCCTATGAGAAGATCCACATGGAGAAGAACAACCTCCAGAGAGACCTGGACAAAATGaccagtcTAGTGGAGAAGCACGCAGAGCATATCGTGGATCTGGAGTCTgctctgagacagagagacaactcGCTACAGAAGCTCAACACCCAGCTACACAGCAAGGACATCCAATACCTGCAGCTACATAGCCCAGACAATCACATGCTGGACTGTCCTGCGCTGACCCTGCAGAGCTCTCGTAGTCTAGACACTTTGTCAGACCTGAAGCTGCAGCGTCTGGAGGTGGAGCTAGAGAGGGCGCGGCATGAGGCCGAGCGGGCGTGTCAGAGGGAAGAGGAAGTGAAGGCCGAGTGTGAGAGACTGCAGGAGGAGCTGAGACAGATCCAGAACAACCACATAGGGAGGGAAATGACTTCGCCGTGTGAGCAGTGTGATGTGGAGTGGATAAAGAAGGTGGGAGATGAGCAGGTGAATTTGGCGTTAGCCTACACAGAGCTAACTGAGGAGTTGGGACGTCTCCAAGCACTGAGCTCCAAACAAAAAGAGATCTTGAGGATGGTCTCTCAGGAGCAGCATAGCCCAGtCCAACGCCACTCCCACCCCCCTTCTCCCATCCCTCACCAACGCCACTCCCCCGTGCCCCAGCGACACTCCCCCATCCCCCAACGCCACTCCCCCGTCCCTCCTCAGCACCACTCCCCCATTGCCCAGTGCCGCTCCCCGGTGCTCCAGCCGCAGCATCTCTCCCCGGACATGCACCGCCGTTCGCCCCTGCTGGACGTCAACGATGGGCCTGCCTCCTACTCCTGCCGGCCAGCCAGCCACCACCTGAGGGCCAGCTTCCAGGGCCGACGGAGCTACTCCGAGGTGGCCGACCCCTCGGCCTACCAGCGGCCACCGCGCTTCAGCCTGGACCCCGTGTCCACACTGCCCAAGCCCCGGCCCTACAGGGACTCCGGCTACTCAAAGCAGCATCAGCAGCATGAGCATGGAGGCTCCCAGCATGGAGGGTCACCCCACAGAGGAGGCCAGCTCCGAGCCTCCCAGTCTGGGCTAGAGAGGGCAGGGAGTGAGGTGGGCCTCCACGAAAGTTCCTGCCACTCTCGAGAGCTGCCCTTCCCCCTGTCCGAGGTCTCTCCCAGGTCTCACCTGCACTTTGAGCCTCTGCCCCCCCCCACGCCCGCCCCCCAGCTTCCGCAGTCCTCTGAAGACGAGGAAGAGTGGACCTGTCCGCACCCCATCAGCCCCCCACAGACGCTGGGCGTGCCCAACAATGTGTCAGCTCATGGGGTCATGAAGGGGCCAGCGTCCTGCTCGGCCTTCCCCATCCCATCCAGACCCAACACTCTGACCTGTcacccgccaggctacctgcacACAGAGCACGCCCAGTCCTGGCCCTCCATCAATCTGTGGATGGAGACAGAAGAGAGTGACATGAGAAGCTGCCCTCTGTGCCAGCTGATCTTTCCCATGGGTTACCCTGACGACGCCCTAATCAAGCACATTGACTCGCACCTGGAGAACAGCAAGATCTGATCGCCACGGCAACACGGCACCCTCTTTTTAGTTGCAACAATTCTTTACTTACATTGTGGAGTATTTTAGGTTGGTTTTGTTTTATAGCTGGGTGCCTTTTGTTTGACAAGACAAGAGGGCTTATTGTGTGTTTAGTAGTCCATGTATGGGAAAAGGTTTAGGGAATGACAAGGATGGCTTCGAGGTTCATGACAGACAATGTCCTGAGGGTTCCAGGCCACTTGCAGTCCATTTGTTTTTATATCTTACACCTTACCACTACTACTTGCTGTAAAGTGGCCTGCTTTAGTTTGACTCTCTACCCATGTACAGTATAAGGCTTGTGAAATACAGACCAACTACAATTAATTCCTGTAATTATCTGGGGGGCCAGATGGATAAATCCAGTTTGTTTGTTCTTCAGGGCTTGACAATGTGCGGTCAGAGGTCAGAGTTATGAAGAGAGGATGGAAGTGTTGTGACTGTGACTGATTGTATGTAGGGACGAATTTGTCCTGCAGGGTGGGGCATGTAGTTGCTATGACAACCTTGCTGTGGTAAAACGCATAGGCAGATTATCTGTATTATCTTGCGGCCTGATCAGAAATCCATATAATCCATATAAATCTGAGCACATTAAGTTAACCTACACTATATAAGCCTATAGTCCCCcctatattatttatttaaccccCTAGAGTTGATGTCTGCGCTCCACGGACATTTTGCTCTACTACCcccacaagcgtcttgggactGGTCTGAGGTTGGTTCAGCCGATCTGCcgacttctgtctgtagcgtccgaacagtttaGGATACAcgctaatatgacccctctgtggaaaggtgagactctcacgaacatgtcGGTTGAAGTTCTCCCTGTACCAGTTGGGGAAAAAAATGGAAGTACTGTatagtgccaaaaataaggggttaaatacatgtttaaaaaatataaataaatgtttcctgatctttcttatatctttcagatataggacagacactttagaacaaacttcctttatctgttgttccatgtagtgaatatgttattcaatgcgttggtatgggctaatagcagtaaggacaaaCATTTTTTAGCACAAAATTATTTTGTAATATTTTTGGGGATACATCAAGGggtttgaatgttcaaaatcaaatagcaaaaatatccttggtatgaccttcttaaaaacaattacatatagcttagtagaacccaaCCCCACCTCcccggcttagacagggcttagactgtaAAGGGTTAAAGGGAAATTTCCACCACTTTTTAACCTAAttgtcattatctccagcacaataccagtgtcgacatatgtgaaaatggtgcATTTCTATGCTTTGTAGAAATAAATATAGCATTTAAAAGTTCTCCcagatgacatcatcaaaagtTCCAACATTTAAAAAACTGTGATTCTCAAACTCAATGAGATGCACAGTGAAGTAAGGAGCAAGAAAATGCCCTCCTTTTTTTTATgctaccctgtgatgtcacagagaagcattttTTGGACCTTTGCTCTTATCTTTTTAACCACATTTCATAGAAACGCGCTGTTTTCACATATGCagacactggtttggtgctggaaATATTGAAAATGTATCATTTGATATATAATGTATCATTTGATATATCTGTAAGTAATGAGGCAAAAAAAATCTGTAAAAAAACATTTGTGCTGAACATGTCTTATGTTGGTGAAATTTCCCCCTCCTAAGCTTGCACAATACTGTATATAGCTAGTGGGACAGGAGTTTGTATATGGAAGAGGGAATGGAATATATTTGTATATGATAACAATGATTCAACTGGGAGTCTCTTTGGTCTTCCTGAAGATCTGACCTGCAAACACATCTGATAAAGTATTTATAAGATTTCTCAATCTTACAGTCTGAAGCTGGCACACTTTGCATTTTATATCTAATATATATACATGTCAAATATAACCCCAAAAAATCAGTGAGTGTTGTAtggaataacacacatggaatcatgtagtatccaaaaaaaaaaaaagttttaaacaaatccaaatatattttagattttagattcttcaaagtagccaccctttgacttgatgacagctttgcacagtcttggcatggctactttg

Function

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913161 lncRNA downstream 42560 19905197 ~ 19970513 (-) True G1672119
TU1913157 lncRNA downstream 44908 19884508 ~ 19968165 (-) True G1672115
TU1913218 lncRNA downstream 73373 19938149 ~ 19939700 (-) True G1672171
TU1913091 lncRNA downstream 270120 19742569 ~ 19742953 (-) True G1672063
TU1913066 lncRNA downstream 301311 19711504 ~ 19711762 (-) True G1672041
TU1913416 lncRNA upstream 100617 20227204 ~ 20230281 (-) True G1672363
TU1913465 lncRNA upstream 160832 20287419 ~ 20334652 (-) True G1672410
TU1913476 lncRNA upstream 170957 20297544 ~ 20300668 (-) True LOC110499118
TU1913477 lncRNA upstream 186680 20313267 ~ 20314911 (-) True G1672414
TU1913584 lncRNA upstream 373816 20500403 ~ 20500608 (-) True G1672518
XM_036955946.1 mRNA downstream 51717 19941466 ~ 19961356 (-) False LOC110499122
XM_021576045.2 mRNA downstream 52334 19941705 ~ 19960739 (-) True LOC110499122
XM_021576047.2 mRNA downstream 99203 19907335 ~ 19913870 (-) True LOC110499124
XM_021576049.2 mRNA downstream 114753 19886553 ~ 19898320 (-) True LOC110499125
XM_021576048.2 mRNA downstream 115116 19886553 ~ 19897957 (-) False LOC110499125
trnaa-ugc-145 mRNA upstream 40049 20166636 ~ 20166705 (-) True trnaa-ugc-145
XM_021576037.2 mRNA upstream 170957 20297544 ~ 20308719 (-) False LOC110499118
XM_021576039.2 mRNA upstream 170957 20297544 ~ 20308719 (-) False LOC110499118
XM_036955948.1 mRNA upstream 170957 20297544 ~ 20308719 (-) False LOC110499118
XM_036955950.1 mRNA upstream 170957 20297544 ~ 20308719 (-) False LOC110499118
TU1912901 other downstream 578032 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 606142 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 939886 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1370189 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 1380986 18631507 ~ 18632087 (-) True G1671584
TU1913435 other upstream 122872 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 494155 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 602688 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1462442 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1709746 21836333 ~ 21844793 (-) True G1673740

Expression Profile