RNA id: TU1913476


Basic Information

Item Value
RNA id TU1913476
length 2938
lncRNA type sense_over
GC content 0.37
exon number 3
gene id LOC110499118
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20297544 ~ 20308774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATTTCAAAATGGGAGATTGGTTGAGGGAGTAGGAAGTGGGGAGGGGAAGTTTTGATGGGAAGAGATTCATTTTTAGGGTTAATTTGGCTCAGATCTAGCCAAAACATTTTAGATTATAAGCATGTTTGAGAGCTAACGGTACAACAGAACGCCGTTTGATgaaaaaaaatctaacattttATGGTAAAAATCTTATTTATCTCAAGTTTTCTGAAGACCAAACTAATATTTTTCGAAGGAAAGAGAATTGCATTTTCACTTCACTTTTGACACCTAACAAAAATGCCAGACTCGGGTACATTCTCTGCTTACGCAcatgtataaatacatttgagaaATACAAAACCGACAAtggggggggaaaaaaaatagaaaaggAACACATCTACAGCTATGAATGTGGAGAGGACTGAGGCTGCAGCACCCTACCAACTACCTGCTGTTTATTCTGACTGTCTGAGATGCACTGCCTACAAGGGGATGGTCAAGGGCCCTTGCGTGACTGGGCTAGTGTTCACATCAACAGACAAGCTGGCTCTTTAGACTGAAGTGAAAACCCATGTACCCCCACTGCAAGGAAGGATATGGACTCGACAGTTCTGCTGCGGTGCAAACAGTATCTGATCTGAATGGAAAAGTGGGGGCATGGATGCTGGATTCATGTTGTTGTGTCTTTATTGTTTGTGACTTGGCTAGAGGGGCTTGATTATCACACTTCATGTTAAGACCTACTTTATTTTCATCTCAGAAAAAAATTGATGTTTTACTCTTCAAATGCTCAAGCCCAGGGTGGTTTATTTATTGATTTTCTTAAGCTTTTAATTTTTACTTAAATAAACTAATGCATGTGTGCCATGCAATTTTTCTTGAATTTCTGATGACAATAATTACTTTACTTCTTTCCATTTGATCTGTAATTAAACCAACTGCATCTCCATTAGAGAATGCTGTGAGAAAAGTGAAAACTAGTTTATTTAGCTATGCTTGCTAAAATAGGCTATTTGTTTACCAAGGAATAATTGTGTATTTTTGTCTAAAGGTTGTATCTAAAAACACTTTGGAATGAAGGTCCATATTCTGCTACAAGACATTTAACTTGAACAAATGTTTAGCTAGTGCCATATCTTTGATGAAAATCCTGTAGGTCTGAAAACACATCCACATGTTGAGCGATTGGGTGGATTTCCATCTTATAACTAATTGAAACTCAATTGGTTATTTTGGCACATCCCATGTATTCAAAAGATCATGAATGAATGATAAATTGGTCTGTTTAAAAGAACCGGATGTGAAAGAGTGGGTTTTGTGAGTAACTGGTGAGCTTACCTTGGGAGTGAAGATCAAATGGTTGTTGCAAATGAATGTTGCAGGGAATAAGCTATAGATTGACCCTAGATTAAAAACCAATAAAAAAAAAGTCTGACCATCGCCAAAGTAACTACCACATCAGAGAGACCTTGAGTAAAGATCAAGACCCTAGAACCCTAGACACAGAGCAATCCCAAACCCAACACACCACCCAGCTCCACATATCAACAAGACAACATAACCATCAGCCAATGGCAGGCCATTTCACTCAGTCACACCAGAGAATATGACACGTAGCCTCCCCTGGAATAATCTCTCAATGCCAATATTAATCAAATCTAAGACAACAATTTATTCAGCTGGGGAGGAGATGAGATTAGGTTAAACTGTAGGTTATATCCAAGTTGACCTCCATGGATATAATCAGGTTTTCAATCAGCTGAAGCCACTCTGAGAAATGGACGAGCATAGAGGGCAATAGGAACACCATGACAGCCATGACTACATCTACATGAGAGCAAATGGAGCAGTCAAGATACATGGCTAACATTTCCATTGAATAACTGTAAAGGCTAGAAACGGGTAGAATGATAGTACCTCCATCTCCAATAACTAATAAGATAAAGGGAGCTGGTAGGTTTTTCTGTCAACCCCTGCTATAGTATATGTTGTGAGAGATGTGGAATTGAATCTACAATTTAACAGGAGTAAGTTGTCAATagtatacatacactaaactGGAccttggggggaaaaaaagaaaaaaaatcaaaataataattatgataACAAGAGTATATGCCCGCTTTTCATCATCTCAACTGAGAAATGATGCATGCTTTGTTTCATAGTTGTTTCTCAAATTTCTTTCTGGAAATGCAAAATGGTTGACAGTCATACGCAGACAATTCTTTTTTGttgtggtttaaaaaaaaaaaaattaatgcTGAAAAAAAGGCTATTCTCTTTCCTCATGTGATGAAGGTTGTTCTTAGGGACTGTTGGTTGATATGATCATTTCTCTCCTCTGCTGTATCAGTTGGAGTCAAAGAGAAAAATGAATGGTGCAAGTGTACATGTGTTGTGGAGCAGTACTGTGACATTGTTCCTTGTCATGGGGAGATGAAATGCAATGGGAAATGGGCATATGGGGTCAAGGGTCAAAAGCAAGGGAATCTTGACCCTCTCGCCCCAACTCACTAAAATGTGCCATTTTTTTCAATTGTATCACTGAGTAGTTGTTTGAAAAAGACTTGAAAAACCTtacaaaaagagagaaaaaagacgTGATAGAACATTTCTGTTGACTTTTTCTGTATCTTGTTACGTACTTTGTAGAACAAAAAAGAAACAGTGTTAAAGAACTTCAAAAGGGTATTTCATTGACTGCATGTGTGccgagtgtgtgagtgtgtgtgtgagagtttatTTGTACAGAAGAATGTGTGAAGTTTGTTTTCTTATAACCAATAGGAAGTGGAAAAAGAGGATACTCTACACTGATAGGCTACTAGTTATTTTGAAAAAGCCTTTGCTGTAATTGAACCTTTTCCAGTTTGTTTCTGCTTACTTTAATTTATTTTTGTACTGTGATGGAAAATAAAATGCACTGATTGCTCATGATGCA

Function

GO:

id name namespace
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016533 protein kinase 5 complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913416 lncRNA downstream 67263 20227204 ~ 20230281 (-) True G1672363
TU1913343 lncRNA downstream 168532 20114541 ~ 20129012 (-) True G1672294
TU1913222 lncRNA downstream 256287 19943973 ~ 20041257 (-) True G1672173
TU1913161 lncRNA downstream 327031 19905197 ~ 19970513 (-) True G1672119
TU1913477 lncRNA upstream 12599 20313267 ~ 20314911 (-) True G1672414
TU1913584 lncRNA upstream 199735 20500403 ~ 20500608 (-) True G1672518
TU1913585 lncRNA upstream 201100 20501768 ~ 20501975 (-) True G1672519
TU1913588 lncRNA upstream 203588 20504256 ~ 20504466 (-) True G1672522
TU1913599 lncRNA upstream 211574 20512242 ~ 20512962 (-) True G1672533
trnaa-ugc-145 mRNA downstream 130839 20166636 ~ 20166705 (-) True trnaa-ugc-145
XM_021576042.2 mRNA downstream 170957 20013073 ~ 20126587 (-) True LOC110499121
XM_036955946.1 mRNA downstream 336188 19941466 ~ 19961356 (-) False LOC110499122
XM_021576045.2 mRNA downstream 336805 19941705 ~ 19960739 (-) True LOC110499122
XM_021576047.2 mRNA downstream 383674 19907335 ~ 19913870 (-) True LOC110499124
XM_021576034.2 mRNA upstream 68328 20368996 ~ 20407349 (-) True LOC110499116
XM_021576022.2 mRNA upstream 465455 20766123 ~ 20807358 (-) False LOC110499110
XM_036955959.1 mRNA upstream 465455 20766123 ~ 20807510 (-) True LOC110499110
XM_021576021.2 mRNA upstream 561682 20862350 ~ 20872069 (-) True LOC110499109
XM_036955542.1 mRNA upstream 654531 20955199 ~ 20957806 (-) True LOC118941997
TU1913435 other downstream 46379 20249459 ~ 20251165 (-) True G1672381
TU1912901 other downstream 862503 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 890613 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 1224357 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1654660 18638381 ~ 18642884 (-) True G1671580
TU1913660 other upstream 320074 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 428607 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1288361 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1535665 21836333 ~ 21844793 (-) True G1673740
TU1915580 other upstream 2030682 22331350 ~ 22331806 (-) True G1674299

Expression Profile