RNA id: XM_036955958.1


Basic Information

Item Value
RNA id XM_036955958.1
length 2943
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110499111
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20735432 ~ 20764082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGACCTGGAGATTGAGCTGGTGGAGGAGGAGCCTCCGTTCCTGAGAGGACACACTAAACAGAGTATGGACATGAGCCCTGTCAAGATTGTTAAGTGTGAACAAATGCCGTTCTCTCGGTTTGCCTCTGTCAGAATCCAGATGGCTCGCTGTCCCAGGCAGCCATGATGCAGAGTGCTTTGgctaaggagaggagggaggtgaagcAGGCTCAGCGAATGGCTGAGATGGACTGCATACCTATTGGCCTCAACAAGCACTGGGTAGACCCCCTGCCTGACTTTGATGGAAGGCAGATTGCAGCCAACATGAGAGGAATTGGCATGATGCCAGACGGCGTCCCGGAGTGGAAGAAACATGCCTTTGGAGGCAACCAGGCCTCTTATGGCAAGAAGACAGTGCTTTCCAtcctggagcagagagagagcctgCCCATCTTCAAGCTCAAAGAGCAGCTCATACAGGCTGTCCACGATAATCAGATCCTGATTGTGGTTGGAGAGACTGGCTCTGGGAAAACTACCCAGATCACCCAGTACCTGGCCGAGGCGGGCTACTCCGCTCGGGGGAAGATCGGCTGCACTCAGCCCCGTCGTGTGGCAGCCATGTCCGTGGCCAAGAGAGTCTCTGAAGAGTACGGTTGCTGTCTTGGCCAGGAGGTGGGCTACACCATCCGTTTTGAGGACTGCACCAGCCCTGAGACGGTGATCAAGTACATGACACATGGTATGCTGCAGAGGGAATGTCTGATAGATCCGGACATGGGTCAGTACACCATCATCATGTTGGACGAGGCCCACGAGAGGACCATCCATACTGACGTGCTCTTTGGTCTGCTCAAGAAGACAGTGAAGAAGCGCCCAGACATGAAGCTGATTGTGTCCTCAGCGACACTAGATGCCGTCAAGTTCTCACAGTACTTCTTCGAGGCGCCCATCTTTACCATCCCAGGACGCACTTTCCCAGTGGAGGTGCTCTACTGCAAAGAGCCTGAGACGGACTACCTGGACGCCAGTCTCATCACCGTCATGCAGATCCACCTGACCGAGCCTCCAGGTGATGTCCTGGTGTTTCTGACGGGTCAGGAGGAGATTGACACCGCTTGTGAGATCTTGTATGAACGGATGAAGTCTCTGGGACCTGAAGTGCCTGAACTCATCATTCTACCTGTCTACTCTGCGCTGCCAAGCGAGATGCAGACCCGTATCTTTGACCCTGCTCCCCCCGGCAGCAGGAAGGTAATCATTGCCACTAACATTGCTGAGACGTCTCTGACTATTGATGGGATTTACTATGTGGTGGACCCAGGCTTTGTAAAGCAGAATGTCTACAATTCCAAGACTGGCGTCGACCAATTAGTGGTGACCCCCATATCACAGGCCCAAGCCAAGCAGCGTTCTGGTAGGGCTGGAAGAACTGGCCCTGGGAAATGCTACCGGCTATTTACAGAGAGAGCCTACAGAGACGAGATGCTCACCAGCAATGTGCCTGAAATCCAGAGAACAAACCTGGCCAGTACCATGCTGTCTCTCAAGGCCATGGGCATCAATGACCTGCTATCGTTTGATTTCATGGACGCTCCACCCATGGAGACGATGATCACAGCCATGGAGCAGCTCTACACTTTAGGGGCTCTGGATGATGAGGGGTTGCTCACTCGACTTGGACGCAGGATGGCGGAGTTCCCTCTGGAGCCCATGCTGTGTAAGATGCTGATCATGTCCGTCCACCTGGGCTGCAGTGAGGAGATGCTCACCATCGTCTCCATGCTGTCTGTGCAGAACGTCTTCTACAGGCCCAAGGACAAGCAGCAGATGGCAGACCAGAAGAAGGCTAAGTTCCACCAGGCTGAGGGAGACCACCTTACTCTGCTGGCTGTCTATAACTCCTGGAAGAACAACAAGTTCTCCAACCCCTGGTGCTTTGAGAACTTCATCCAGGCCCGTTCCTTGCGCAGAGCCCAGGATATCCGCAAACAGATGCTGGGTATCATGGACAGGCATAAACTGGACATGGTGTCTTGTGGCAAGGCCACAGTGCGCATACAGAAGGCCATCTGCAGTGGTTTCTTCCGGAACGCAGCCAAAAAGGATCCCCAGGAGGGCTACCGTACGCTCATTGACCAGCAGGTGGTGTACATCCACCCCTCCAGTTCCCTGTTCAACCGCCAGCCTGAGTGGTTAGTGTACCATGAGTTGGTGCTGACCACTAAGGAGTACATGAGGGAGGTGACCACCATTGACCCACGCTGGCTGGTAGAGTTCTCGCCGGCCTTTTTCAAAGTGGCCGATCCCACGCGTCTCAGCAAACAGAAGAAGATGCAGCGCCTCGAGCCCCTCTACAACCGTTACGAGGAGCCCAACGCTTGGAGAATCTCCCGTGCCTTTCGCAGGAAGTAGAGGTGTATCCCTATACCCTTACACACAGGCTCACAccacagcaggagagagagggagactgtccTTGACAACTGGTTGAGAAATACCCCGTCCATTGTTCCTTGCTGTGTTCCTTCCGAGTCATTTGGCTTCATGGTCAATGTCAGTTAACTTACCTCCCATCAGACAGATAATCAAGTGCCCATATATTaccaaaaagttttttttttgtccaatGTATAAATTATCTCAAAACAGAACATTACGGATTCCCTCAAAGAAAATGACCATTAAGTGATTAGGAAGGAGACTGGACACTTTAAGTGGGCAGTAATCTGATCAGTCAGTGGAAGTCTGTTTGTTTATGAGGACACAATGCTCAGAGTCCATTTAGTCTAGAGGTCTCATGTAATATAGTTTATATCTAGGGAAATGGATCGGACTTTGATTGTGGTCAACAATTACCAGATCTGTGGTTTTATTAAGATGACGGAAATGTAAGCGAACTGAAATGAGTGATATCTAAATGACCATATTTTTCCATATTAAATATTGGATGGTCTCA

Function

GO:

id name namespace
GO:0070054 mRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912109 lncRNA upstream 49691 20698167 ~ 20699165 (+) True G1671235
TU1912110 lncRNA upstream 60937 20686091 ~ 20687919 (+) True LOC110499114
TU1912154 lncRNA upstream 195318 20553314 ~ 20553538 (+) True G1671279
TU1912153 lncRNA upstream 195864 20552783 ~ 20552992 (+) True G1671278
TU1912133 lncRNA upstream 219312 20529228 ~ 20529544 (+) True G1671259
TU1913846 lncRNA downstream 136691 20900773 ~ 20901240 (+) True G1672761
TU1913847 lncRNA downstream 137250 20901332 ~ 20901794 (+) True G1672762
TU1913848 lncRNA downstream 137848 20901930 ~ 20902289 (+) True G1672763
TU1913850 lncRNA downstream 151683 20915765 ~ 20916840 (+) True G1672765
TU1913851 lncRNA downstream 163867 20927949 ~ 20928209 (+) True G1672766
XM_036955957.1 mRNA upstream 13517 20706399 ~ 20735339 (+) True LOC110499112
XM_021576029.2 mRNA upstream 60793 20654464 ~ 20688063 (+) False LOC110499114
XR_005037956.1 mRNA upstream 104788 20493325 ~ 20644068 (+) True LOC118942050
XM_036955956.1 mRNA upstream 379580 20319484 ~ 20369276 (+) True LOC110499115
XM_021576035.2 mRNA upstream 433946 20308748 ~ 20314910 (+) True LOC110499117
XM_021576019.2 mRNA downstream 238569 21002651 ~ 21040111 (+) False LOC110499108
XM_021576020.2 mRNA downstream 238569 21002651 ~ 21040111 (+) True LOC110499108
XM_021576017.2 mRNA downstream 390453 21154535 ~ 21168654 (+) False LOC110499107
XM_021576015.2 mRNA downstream 390455 21154537 ~ 21168654 (+) True LOC110499107
trnal-uag-53 mRNA downstream 464441 21228523 ~ 21228604 (+) True trnal-uag-53
TU1911957 other upstream 520688 20227795 ~ 20228168 (+) True G1671091
TU1911253 other upstream 1623620 19095044 ~ 19125236 (+) False LOC110499153
TU1910974 other upstream 2627689 18051611 ~ 18121167 (+) False G1670209
TU1914009 other downstream 325321 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 376443 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 532290 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 552716 21316798 ~ 21317412 (+) True G1673063
TU1914333 other downstream 622247 21386329 ~ 21389778 (+) True G1673204

Expression Profile