RNA id: XM_021576014.2


Basic Information

Item Value
RNA id XM_021576014.2
length 4852
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110499105
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21191611 ~ 21214252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATACGTGCAGGGAGTACACGTCGCAGTGGCGGACGGGTGGACCAAGGGCGccttcaacaaaaaaaaacgttttggAATGTGCAGATAGAGATGTCATGAATAGATGCAACATGATTCCTTGGTCTTGTTcttctatatatttatatctgaaACGTTCGACAACTGAACGTGGCCCAGGGAACAGACAAAACAGAGAAGCGCGACTCGCCCTGGATCCTCAGGCCAGAATCCACCACAGTCCAGCAGTGGTCCTCTGATTTGGCATGCACCTGGAGTAACAGCTGTCAAGCTAGCAACTACCTGAAAACTGCAAATACCGCCAGACAGACAAACCGCAGGAGACGAAGAGGAAGTTGGTGGAGGATTGTCAGGGCATGCATATTTTCATCAAGTAGCCTCTGTCCACGGTTCAGATTAGTACTCATCACACAGACCCCAGTCACCAGTCAACATGGAGGATGAACTGATATTCAGTATGGATGAGGTGGGCAGTGCCCAACGTAACCCACTGCAACAGAGGACCCCTGATCAACGGGCCCCATCTCTAAGCAACGCTTACGATAGCGACGAGGACGACTACTACATCTGTCCAATCACAGACGACCCTGTCAGCCAGGCCGAAGACATCTGTGGCTATTTAAAGAATCTCGTCCACAGCAAGCAGCTGTCTAACTCCCCCAAAAACTCCTTCTCCTACAAGGCGGTGTGGAAAAGAGCCATAGAGAAGGCCAAGGCCATGCCTGACCCATGGGCTGAGTTTCACCTGGAAGAAGTCAAGACAGAGCCATGCATACGATACAGGTACAATGCTATCACGGCGGCATGGTCTCAAGACACAGTGCACATCAAGGTTTCTGGCCAGCCTTTTGGACGCGGGGCCATGAGGGAATGCTTCAGAACGAAGAAGCTGTCTAACTTCTCCCATAGTAGTAACTGGAAGTGTGCGTGTAACTATGTGACGAAGCGCTACATGGAGCCTGTGGACAGGGATGTGTACTTTGAGGATGTCAGGCTGCAGATGGAGGCCAAACTCTGGGGAGAAGAGTACAACCGCCACAGGCCACCCAAACAGgtGGACATCATGCAGATGTGTGTGATTGAGATGATGGAGCGTCCAGGTAAACCTCTGTACCACCTGGAACACTACATAGAGGGGAAGTACATCAAATACAACTCCAACTCTGGCTTCGTCAAGGATGACAACATCAGGCTCACTCCACAGGCATTCAGTCACTTCTCGTTTGAACGTTCGGCCCACCAGCTGATCGTGGTGGACATCCAGGGGGTGGGGGACCTCTACACGGACCCTCAGATCcacacagagagggggacagacttCGGAGACGGAAACCTGGgtgtGCGGGGCATGGCACTGTTCTTCCACTCCCACCTGTGTAATAAGATATGTAAGAGTATGGGGCTCACACCCTTTGACCTCTCCACTGCAGAGAAAAGCCAGCTAGACTGCACCAACACACTGCTGAAGTCGGCCCAGACGGTACTGAGGGGTAGTGAGGAACAGTGTGGTTTCACTCGTTTTCGTACTATATCAGGGGGCCGTGTGGCCCCACTTCTCTCCCACCTGTCGGAGACCTCGTCTGGGGATGACTCTATGAGTGACATAAGTGACTCCATCCCCTGCTCGCCCCTCGCCTTCCCCGGCTCTCCACTAGGACAGCACTTCTCTATGGGCTCCATGGGCAGGTCTCCTCTGGGTTGGTCTTTCATAAATGAGATGGATGAACGAGAGAAACACAACCGCAGCCACAGCCCAGAACACAAAGACTCAGAGAATGGAGGAGACAGTGGTTGTCcaagtgagaggaggagtgaaggggACCCAACCGACCATGCAGATGGGctGACAGATGATAAATGGAGTGTCTACCACTCGTCTCGTTCTCACGTCCACCGGCCATCCTGTGTTGCTGTGGAGATGGAAAGACTTGACTCGCTGATCCTGGAGAAGAAGATTGGCAAGTCCATCCTGGGGAAGGTGCACCTGGCGATGGTGCATTACCACGAGGCTGGTCGGTTCTGTGACAAGGAGGAGCAGTGGGACCAGGACTCAGCCATGTACCACCTGGAGAGAGCCGCCATGTGTGGGGAACTAGAGGCTATCGTTGCCCTGGGACAGTGTTACCTACAGCTGCCACACCATATACTGTCAGAGATGGAGCTAGAGGACAACTCAGGGAGCCGTATGAAGGGCTTTAAGTTCCTTCTGCAGGCTGCTGAGGCAGGACACAGATCCTGCATGATCCTGGTGGCCAGGGCCTTCGACACCGGCATCAACCTCTCACCAGACAGGTCCCAGGACTGGAAGGAGGCGATGAGATGGTACAACTGTGCCCTGAACATGACAGACTATGATGAGGGGGGCGAGTTTGACGGCATGCAGGACGAGCCTTGCTACCAGCTGCTGGCCAGAGAGGCTGAGATGTACCAGGAGGGGGGCCACAGCCTGGACCCAGACCCACAGAGAGCAGGTGATCTGTTCACAGAGGCAGCAGACGCAGCCATGGAGGCCATGAAGGGCCGACTGGCCAACCAGTACTATATGAAAGCAGAGGAGGCCTGGGGCatgatggaggaagaggagtaggAGACGGGCTGGCACTCTGCAAGGCCAAAGGAATCGGCTAAAGCAGAAACAAGCTGGCACCCAGGATAATGTTGTGATGGATTTTCCTCCCTAATGGTTTAAAGTTTACAGACACATTTACTGTGTGATTTCCAAAATGCTGTGTGATTGTTTGATCTGTATATGACCTTTTATGCAGCCGTCCTCTAGCCTAGCTATCTTTCTTGGTGCTTCAGAGGGAATTATGTCTGGTTCTTGCCTTGTACATTTTTCCTCTTTTCTATTCCTGTCCCCCATTGCCCTTTGGACTAATGAATATGGTTGCATTTCAGAGGCAATTTACCTAACTAAAAATAAGCAATTCAAACTAGAAAATGACACTTCCTAAAAAAGAATGTGCTTGCTAGCTTAAAGGGATATTTTAGGATTTTTTCAATGAGGCCCttcatctacttccccagagtcagatgcaCTTGTGGATATgatttttatgtctttgtgtccaGTAAGAAGGaagttggaggtagttttgtgtgCCAATGCTacctagcattagcacaatgacaaagtatatgggtatctgctagcatgctagtagatacccatagacttagAGTAATTGTGTTAAAGTTAGCCGTGTTAATATTTGTAGCTGAAATTGTTACAGATAATTAGCATTGTAAGTGTCTACCATTGTGTTCTTACGGTTGGCATTGAATTCATGATAGTCTATACAAATGAATTGAAGTTGGGATAGCCTAAATATTTTGAAGTTGGTATTGTAGTTTATTCCATGGGTCTCATTCAAACCCATGTTAATATATGGTAATGTGAAATGGTTATAGTATAAAAAATCTGAATGCAATCACGCTAAGTTGATTTCAAAGTCTGGTTGGAGTTGATAGCTAATCATCCCTTTCTTACGGcgtgcttcagttcggctggccCTTAGCCAAACTCGGCTAGCCAAACTGAACTAGTGTGCTCACATACACCCTTAAAACACATTCGCTCGAAAAACAGAACGAAAAGTgccaatagtactgtttgtccattttgagatgaagtaggaagtttacactTCTTCAGAATAGtccgaattaatctaagataactcaagaaatgtCATTCATTTTGATGTTTTTGCCTAGGAGATCTTAGAcccgcaattttacatctaactaggatgtttggtgcagtattatTTTATGAAAACAAGtcatctctcgttgaatgacagaCTTTAtggaagaatccctactgttgacctaCAGTAGACTTCGTTCGGCTCCAAACTTTGGCTTGCCTCCAAAAAGAAATGTGTGCCAGAACAGCCGGGAAAAAAACGAATCGAAGTCCGAACCGTCACAAAATgtcgtcataatatatgcacaaattCTACCAAACTGTTTCGGCTGGAAAGTGTGCAGACGCCTTTTAAAAATACGGTGACAATTTCAGAAATGAAACTGTTACTGCAAGTTCAGGTGAACACAAAACAACTCAAATATATCAAAATGTCTATACATTTCAGCTGTTTCAAAAACATTGCTCTGCTATTAGTATTTTTACTGTATAAATGTTGGGCTCAACGAGAAAATTCTGCTTACACTGCCCTGCTTAGAGGGGGGCAACGGTCGGCCGAGTGTCGTGTGCGACCTCCGGAGGTAGCGTTCGAGACGTGAGAAATGTGCAAGTTTACATTACGATTATGTCTCTCGAGAATCCCTCAATTCTCCTTAATACTCGTCAATGAGAATAGACCCTTAAACGGTTCAAGAGGAGATGCGTTTTGACTTTTGACTAAAAGGGCCATTAACTAAAAGGTAATGGTCCTTTTATTGCCATTAAATGCATTagatcatgtaaaaaaaaaatgtagttcaAAAAGTATAAATGCTCTAAAATGAATACATTCTCAAGCAATCTAAGTTTGGGCTGGTTGGTTGTATGTTTTTAAAGTTTTGAGTTCATAACTTAAATCGTTTAAGCTCTAGAGCGGGCGGAAGATATCCAATAATAAGAATGCATATTACATTTTAAGAAATCTAGAGTGGTCGTGCCTTCAGCAAGCACATTAATTAATGTTTGATTCATGAAATTAACATTTCTTGAACAAATGTTGTTTACTTTGTGTTGGTTTTGCCTAACACTTTTATAATAGAGGGCACTTGTTGCATTGTTTGCATACTTATATGAATGCATGGAAGTAGCTATATGTAAATGTCTTGACTCTGGAATAAATATGATTTTATTGCAttgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914062 lncRNA downstream 56682 21134689 ~ 21134929 (-) True G1672969
TU1913991 lncRNA downstream 114478 21071024 ~ 21077133 (-) True G1672900
TU1913970 lncRNA downstream 134036 21057367 ~ 21057575 (-) True G1672880
TU1913969 lncRNA downstream 134298 21057012 ~ 21057313 (-) True G1672879
TU1913959 lncRNA downstream 138794 21052483 ~ 21052817 (-) True G1672869
TU1914259 lncRNA upstream 80756 21295006 ~ 21295318 (-) True G1673148
TU1914265 lncRNA upstream 91656 21305906 ~ 21306127 (-) True G1673154
TU1914266 lncRNA upstream 92447 21306697 ~ 21306988 (-) True G1673155
TU1914270 lncRNA upstream 98476 21312726 ~ 21312961 (-) True G1673159
TU1914274 lncRNA upstream 102985 21317235 ~ 21317460 (-) True G1673163
XM_036955555.1 mRNA downstream 212072 20978223 ~ 20979539 (-) True LOC118942009
XM_036955542.1 mRNA downstream 233805 20955199 ~ 20957806 (-) True LOC118941997
XM_021576021.2 mRNA downstream 319542 20862350 ~ 20872069 (-) True LOC110499109
XM_036955959.1 mRNA downstream 384101 20766123 ~ 20807510 (-) True LOC110499110
XM_021576022.2 mRNA downstream 384253 20766123 ~ 20807358 (-) False LOC110499110
XR_002469984.2 mRNA upstream 5185 21219435 ~ 21221837 (-) False LOC110499589
XR_005037957.1 mRNA upstream 5185 21219435 ~ 21221837 (-) True LOC110499589
XM_036955962.1 mRNA upstream 172063 21386313 ~ 21401314 (-) True LOC110499102
XM_036955543.1 mRNA upstream 230541 21444791 ~ 21496435 (-) True LOC110498762
XM_021575994.2 mRNA upstream 374756 21589006 ~ 21596518 (-) False phf5a
TU1913728 other downstream 461539 20729275 ~ 20730072 (-) True G1672649
TU1913660 other downstream 521194 20620742 ~ 20670417 (-) False G1672588
TU1913435 other downstream 940446 20249459 ~ 20251165 (-) True G1672381
TU1912901 other downstream 1756570 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 1784680 19326814 ~ 19406931 (-) True G1671859
TU1914775 other upstream 374779 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 622083 21836333 ~ 21844793 (-) True G1673740
TU1915580 other upstream 1117100 22331350 ~ 22331806 (-) True G1674299
TU1915780 other upstream 1172073 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other upstream 1172073 22386323 ~ 22388478 (-) False LOC118942052

Expression Profile